miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13297 5' -58.7 NC_003409.1 + 133050 0.7 0.584812
Target:  5'- aGGUG-CCUCaC-CACCGgGGCCGGg -3'
miRNA:   3'- gCCAUaGGAGcGuGUGGCgCCGGUCg -5'
13297 5' -58.7 NC_003409.1 + 113405 0.7 0.574846
Target:  5'- aCGGUGUCUgagccagcgCGCaACACgGCGaucgccugcGCCAGCg -3'
miRNA:   3'- -GCCAUAGGa--------GCG-UGUGgCGC---------CGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 133203 0.7 0.56492
Target:  5'- cCGGUGgugaggcaCCUgcaggCGCugGCGCCGCGGaCCGGCc -3'
miRNA:   3'- -GCCAUa-------GGA-----GCG--UGUGGCGCC-GGUCG- -5'
13297 5' -58.7 NC_003409.1 + 36318 0.7 0.55504
Target:  5'- gGGgcaagAUCC-CGCACACgGCGuugaCCAGCg -3'
miRNA:   3'- gCCa----UAGGaGCGUGUGgCGCc---GGUCG- -5'
13297 5' -58.7 NC_003409.1 + 132974 0.71 0.525727
Target:  5'- aGGUA-CUgcaGCGCGCCGCGcGCCuguGCg -3'
miRNA:   3'- gCCAUaGGag-CGUGUGGCGC-CGGu--CG- -5'
13297 5' -58.7 NC_003409.1 + 40521 0.71 0.52476
Target:  5'- gCGGUGUCugCUCGUugGaCGCGGCCguucgguGGCg -3'
miRNA:   3'- -GCCAUAG--GAGCGugUgGCGCCGG-------UCG- -5'
13297 5' -58.7 NC_003409.1 + 43510 0.71 0.516084
Target:  5'- gGGUGUCagcaCGUACACCaCGGCCucugGGCa -3'
miRNA:   3'- gCCAUAGga--GCGUGUGGcGCCGG----UCG- -5'
13297 5' -58.7 NC_003409.1 + 111840 0.73 0.382182
Target:  5'- gGGUuUCCUCGCGucggcCACCGCGGgggCGGCc -3'
miRNA:   3'- gCCAuAGGAGCGU-----GUGGCGCCg--GUCG- -5'
13297 5' -58.7 NC_003409.1 + 24201 0.74 0.366138
Target:  5'- -----cCCUCGCGCACUGCGcGCgCGGCg -3'
miRNA:   3'- gccauaGGAGCGUGUGGCGC-CG-GUCG- -5'
13297 5' -58.7 NC_003409.1 + 113254 0.75 0.293063
Target:  5'- aGGUGcCCUCGCACACCcgucGCGGUguGg -3'
miRNA:   3'- gCCAUaGGAGCGUGUGG----CGCCGguCg -5'
13297 5' -58.7 NC_003409.1 + 117622 0.76 0.254962
Target:  5'- uGGUggCCUgGUugACACCGCGuGCCGGCc -3'
miRNA:   3'- gCCAuaGGAgCG--UGUGGCGC-CGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 78996 0.77 0.249022
Target:  5'- aCGGUAaUCUCGCcgACCGCcaaGGCCAGCa -3'
miRNA:   3'- -GCCAUaGGAGCGugUGGCG---CCGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 43640 1.12 0.000916
Target:  5'- aCGGUAUCCUCGCACACCGCGGCCAGCa -3'
miRNA:   3'- -GCCAUAGGAGCGUGUGGCGCCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.