Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13299 | 5' | -54.6 | NC_003409.1 | + | 82650 | 0.73 | 0.587537 |
Target: 5'- uCCGCCccguGUUguUCUGCCGuauuGUAGGCg -3' miRNA: 3'- cGGCGGuuu-CAG--AGACGGCu---CAUCCG- -5' |
|||||||
13299 | 5' | -54.6 | NC_003409.1 | + | 83851 | 0.73 | 0.608235 |
Target: 5'- cGCCG-CAAAGUCUC-GCgGGGacgGGGCg -3' miRNA: 3'- -CGGCgGUUUCAGAGaCGgCUCa--UCCG- -5' |
|||||||
13299 | 5' | -54.6 | NC_003409.1 | + | 95879 | 0.69 | 0.807736 |
Target: 5'- aCCGaUCu--GUgUCUGCCGAGggAGGCg -3' miRNA: 3'- cGGC-GGuuuCAgAGACGGCUCa-UCCG- -5' |
|||||||
13299 | 5' | -54.6 | NC_003409.1 | + | 97865 | 0.69 | 0.807736 |
Target: 5'- uCUGUCAguagguAGGUCUCUgcaaGCCGGGUgAGGCc -3' miRNA: 3'- cGGCGGU------UUCAGAGA----CGGCUCA-UCCG- -5' |
|||||||
13299 | 5' | -54.6 | NC_003409.1 | + | 110090 | 0.72 | 0.629006 |
Target: 5'- cGCCGCCAGAGcgUUCcugcgccugGCCGAccAGGCg -3' miRNA: 3'- -CGGCGGUUUCa-GAGa--------CGGCUcaUCCG- -5' |
|||||||
13299 | 5' | -54.6 | NC_003409.1 | + | 134350 | 0.67 | 0.894591 |
Target: 5'- gGCUGCCGagaaacccgcGAGaUCUCUGggGAGUAGGa -3' miRNA: 3'- -CGGCGGU----------UUC-AGAGACggCUCAUCCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home