miRNA display CGI


Results 21 - 36 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
133 3' -52.8 AC_000006.1 + 11010 0.69 0.564076
Target:  5'- gCCUaCGAGCaGACGGUGaagcaGGAGCGCa -3'
miRNA:   3'- gGGGcGUUCG-CUGCUACag---UUUCGCG- -5'
133 3' -52.8 AC_000006.1 + 24921 0.69 0.562949
Target:  5'- -gCUGCGgcgcggauggugcGGCGACGGUGUCu--GUGCu -3'
miRNA:   3'- ggGGCGU-------------UCGCUGCUACAGuuuCGCG- -5'
133 3' -52.8 AC_000006.1 + 11286 0.69 0.541655
Target:  5'- aCCCuCGGGCucGGCGAUGUUuagcAGCGCc -3'
miRNA:   3'- gGGGcGUUCG--CUGCUACAGuu--UCGCG- -5'
133 3' -52.8 AC_000006.1 + 16852 0.69 0.541655
Target:  5'- cCCgCCGCcGGCGGCGGU-UCAGGcCGCu -3'
miRNA:   3'- -GG-GGCGuUCGCUGCUAcAGUUUcGCG- -5'
133 3' -52.8 AC_000006.1 + 16801 0.69 0.541655
Target:  5'- aCCgCCGCcGGCGGCGGgccaugCGcAGGCGCc -3'
miRNA:   3'- -GG-GGCGuUCGCUGCUaca---GU-UUCGCG- -5'
133 3' -52.8 AC_000006.1 + 12395 0.7 0.530555
Target:  5'- gCCCGUggGCGACcg-GUCGacgguGAGCaGCu -3'
miRNA:   3'- gGGGCGuuCGCUGcuaCAGU-----UUCG-CG- -5'
133 3' -52.8 AC_000006.1 + 11709 0.7 0.508614
Target:  5'- -aCCGUAGGCGGCcuc--CAAGGCGCg -3'
miRNA:   3'- ggGGCGUUCGCUGcuacaGUUUCGCG- -5'
133 3' -52.8 AC_000006.1 + 26241 0.71 0.476452
Target:  5'- uCCCgggcgaagcagCGCAGGCGGCGGcagugGUCuAGGUGCc -3'
miRNA:   3'- -GGG-----------GCGUUCGCUGCUa----CAGuUUCGCG- -5'
133 3' -52.8 AC_000006.1 + 8645 0.72 0.396114
Target:  5'- aCCCGCGcgcuccacgguGGCGGCGAgGUCAuucGAGaUGCg -3'
miRNA:   3'- gGGGCGU-----------UCGCUGCUaCAGU---UUC-GCG- -5'
133 3' -52.8 AC_000006.1 + 11774 0.72 0.386698
Target:  5'- aCCCCGCcauaaGGGCGGCGcUG-CAAAGCcaGCc -3'
miRNA:   3'- -GGGGCG-----UUCGCUGCuACaGUUUCG--CG- -5'
133 3' -52.8 AC_000006.1 + 13364 0.72 0.377432
Target:  5'- gCCCCGCugccggucGUGGCGcUGUCGccgcGGCGCg -3'
miRNA:   3'- -GGGGCGuu------CGCUGCuACAGUu---UCGCG- -5'
133 3' -52.8 AC_000006.1 + 21006 0.73 0.359352
Target:  5'- gUCCGCAGGCGGCGGaGUC-GGGCcccuGCa -3'
miRNA:   3'- gGGGCGUUCGCUGCUaCAGuUUCG----CG- -5'
133 3' -52.8 AC_000006.1 + 8350 0.73 0.350542
Target:  5'- gCCCCGCGggcaggGGCGGCaGAggcacGUCGGcguGGCGCu -3'
miRNA:   3'- -GGGGCGU------UCGCUG-CUa----CAGUU---UCGCG- -5'
133 3' -52.8 AC_000006.1 + 13045 0.75 0.263897
Target:  5'- gCCCGCGAGCGagggcGCGGUggGUCGGAGCc- -3'
miRNA:   3'- gGGGCGUUCGC-----UGCUA--CAGUUUCGcg -5'
133 3' -52.8 AC_000006.1 + 9197 0.78 0.165071
Target:  5'- uCCCCGCGgcGGCGACGcAUGguuUCGGugacGGCGCg -3'
miRNA:   3'- -GGGGCGU--UCGCUGC-UAC---AGUU----UCGCG- -5'
133 3' -52.8 AC_000006.1 + 15669 1.15 0.000428
Target:  5'- cCCCCGCAAGCGACGAUGUCAAAGCGCa -3'
miRNA:   3'- -GGGGCGUUCGCUGCUACAGUUUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.