miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
133 3' -52.8 AC_000006.1 + 24921 0.69 0.562949
Target:  5'- -gCUGCGgcgcggauggugcGGCGACGGUGUCu--GUGCu -3'
miRNA:   3'- ggGGCGU-------------UCGCUGCUACAGuuuCGCG- -5'
133 3' -52.8 AC_000006.1 + 11286 0.69 0.541655
Target:  5'- aCCCuCGGGCucGGCGAUGUUuagcAGCGCc -3'
miRNA:   3'- gGGGcGUUCG--CUGCUACAGuu--UCGCG- -5'
133 3' -52.8 AC_000006.1 + 16852 0.69 0.541655
Target:  5'- cCCgCCGCcGGCGGCGGU-UCAGGcCGCu -3'
miRNA:   3'- -GG-GGCGuUCGCUGCUAcAGUUUcGCG- -5'
133 3' -52.8 AC_000006.1 + 11709 0.7 0.508614
Target:  5'- -aCCGUAGGCGGCcuc--CAAGGCGCg -3'
miRNA:   3'- ggGGCGUUCGCUGcuacaGUUUCGCG- -5'
133 3' -52.8 AC_000006.1 + 26241 0.71 0.476452
Target:  5'- uCCCgggcgaagcagCGCAGGCGGCGGcagugGUCuAGGUGCc -3'
miRNA:   3'- -GGG-----------GCGUUCGCUGCUa----CAGuUUCGCG- -5'
133 3' -52.8 AC_000006.1 + 13364 0.72 0.377432
Target:  5'- gCCCCGCugccggucGUGGCGcUGUCGccgcGGCGCg -3'
miRNA:   3'- -GGGGCGuu------CGCUGCuACAGUu---UCGCG- -5'
133 3' -52.8 AC_000006.1 + 10820 0.69 0.575381
Target:  5'- -gCUGCAcGCGGgGGUGUCGcuccggggaAGGCGCc -3'
miRNA:   3'- ggGGCGUuCGCUgCUACAGU---------UUCGCG- -5'
133 3' -52.8 AC_000006.1 + 24094 0.68 0.632467
Target:  5'- gUCCG-AGGCGACGGUgcgcucGUCAAAGCcCg -3'
miRNA:   3'- gGGGCgUUCGCUGCUA------CAGUUUCGcG- -5'
133 3' -52.8 AC_000006.1 + 5709 0.68 0.632467
Target:  5'- cCCUCGCAcGUGGCcuccuuUGUCuuGGCGUg -3'
miRNA:   3'- -GGGGCGUuCGCUGcu----ACAGuuUCGCG- -5'
133 3' -52.8 AC_000006.1 + 6266 0.67 0.697432
Target:  5'- aCCCUGCAuaaccGCGGCuGGcgcGUCAggaucgugcccgacGAGCGCa -3'
miRNA:   3'- -GGGGCGUu----CGCUG-CUa--CAGU--------------UUCGCG- -5'
133 3' -52.8 AC_000006.1 + 22722 0.67 0.712018
Target:  5'- gCCCCG-GGGCcACGG-GUCGgcGCGCu -3'
miRNA:   3'- -GGGGCgUUCGcUGCUaCAGUuuCGCG- -5'
133 3' -52.8 AC_000006.1 + 3674 0.66 0.723142
Target:  5'- -gCCGCGgcuGCGGCGGugcUGUCA-AGCGa -3'
miRNA:   3'- ggGGCGUu--CGCUGCU---ACAGUuUCGCg -5'
133 3' -52.8 AC_000006.1 + 23290 0.66 0.734168
Target:  5'- gCCCCa-GAGCGAgGAgcgcGUC--GGCGCg -3'
miRNA:   3'- -GGGGcgUUCGCUgCUa---CAGuuUCGCG- -5'
133 3' -52.8 AC_000006.1 + 14675 0.66 0.755873
Target:  5'- gCgCCGCAGGUGACGuccgggGUGgu-GAGCaGCg -3'
miRNA:   3'- -GgGGCGUUCGCUGC------UACaguUUCG-CG- -5'
133 3' -52.8 AC_000006.1 + 21470 0.66 0.766527
Target:  5'- gCCCUGCAgaugAGcCGGCGuAUGU-GGAGCGa -3'
miRNA:   3'- -GGGGCGU----UC-GCUGC-UACAgUUUCGCg -5'
133 3' -52.8 AC_000006.1 + 21006 0.73 0.359352
Target:  5'- gUCCGCAGGCGGCGGaGUC-GGGCcccuGCa -3'
miRNA:   3'- gGGGCGUUCGCUGCUaCAGuUUCG----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.