Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
133 | 3' | -52.8 | AC_000006.1 | + | 15669 | 1.15 | 0.000428 |
Target: 5'- cCCCCGCAAGCGACGAUGUCAAAGCGCa -3' miRNA: 3'- -GGGGCGUUCGCUGCUACAGUUUCGCG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 5309 | 0.67 | 0.655374 |
Target: 5'- gUCCGCAGGCGGgacaGAggagGgauugCAGGGCGUa -3' miRNA: 3'- gGGGCGUUCGCUg---CUa---Ca----GUUUCGCG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 33101 | 0.67 | 0.655374 |
Target: 5'- gCCCUGCGAuaugGAUGAUGgCGGAGCGa -3' miRNA: 3'- -GGGGCGUUcg--CUGCUACaGUUUCGCg -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 7052 | 0.67 | 0.666798 |
Target: 5'- gCCuuGCgGAGCGAgGugugcGUCAGGGCGa -3' miRNA: 3'- -GGggCG-UUCGCUgCua---CAGUUUCGCg -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 23573 | 0.67 | 0.700809 |
Target: 5'- gCCCGUGgucAGCGAUGAg--CAGcuuGCGCg -3' miRNA: 3'- gGGGCGU---UCGCUGCUacaGUUu--CGCG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 6811 | 0.67 | 0.712018 |
Target: 5'- aCUCgGC-GGUGACGAgaacGUCcauGGCGCa -3' miRNA: 3'- -GGGgCGuUCGCUGCUa---CAGuu-UCGCG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 15500 | 0.66 | 0.723142 |
Target: 5'- cCCCCGCAGGCaggacucgcaGACGAgcgGcCGccGcCGCc -3' miRNA: 3'- -GGGGCGUUCG----------CUGCUa--CaGUuuC-GCG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 8289 | 0.66 | 0.734168 |
Target: 5'- -gCCGCGGuGCGcuuuuagaaGCGGUGUCGcGGaCGCg -3' miRNA: 3'- ggGGCGUU-CGC---------UGCUACAGUuUC-GCG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 9888 | 0.66 | 0.745083 |
Target: 5'- -gCCGCGagaaGGCGcGCGA-GUCGAAGaCGUa -3' miRNA: 3'- ggGGCGU----UCGC-UGCUaCAGUUUC-GCG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 6436 | 0.68 | 0.648507 |
Target: 5'- aCUCGCGGGCGGCcauugcucgcucguaGggGUUGAGGgGCg -3' miRNA: 3'- gGGGCGUUCGCUG---------------CuaCAGUUUCgCG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 15910 | 0.68 | 0.643926 |
Target: 5'- gCCCgGCGAGCGGuccucgGUCAggagcAAGCGUa -3' miRNA: 3'- -GGGgCGUUCGCUgcua--CAGU-----UUCGCG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 15835 | 0.68 | 0.621008 |
Target: 5'- gCUCCGC-GGCGGCGcguaaauUGgaaGGGGCGCa -3' miRNA: 3'- -GGGGCGuUCGCUGCu------ACag-UUUCGCG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 9197 | 0.78 | 0.165071 |
Target: 5'- uCCCCGCGgcGGCGACGcAUGguuUCGGugacGGCGCg -3' miRNA: 3'- -GGGGCGU--UCGCUGC-UAC---AGUU----UCGCG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 13045 | 0.75 | 0.263897 |
Target: 5'- gCCCGCGAGCGagggcGCGGUggGUCGGAGCc- -3' miRNA: 3'- gGGGCGUUCGC-----UGCUA--CAGUUUCGcg -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 8350 | 0.73 | 0.350542 |
Target: 5'- gCCCCGCGggcaggGGCGGCaGAggcacGUCGGcguGGCGCu -3' miRNA: 3'- -GGGGCGU------UCGCUG-CUa----CAGUU---UCGCG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 11774 | 0.72 | 0.386698 |
Target: 5'- aCCCCGCcauaaGGGCGGCGcUG-CAAAGCcaGCc -3' miRNA: 3'- -GGGGCG-----UUCGCUGCuACaGUUUCG--CG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 8645 | 0.72 | 0.396114 |
Target: 5'- aCCCGCGcgcuccacgguGGCGGCGAgGUCAuucGAGaUGCg -3' miRNA: 3'- gGGGCGU-----------UCGCUGCUaCAGU---UUC-GCG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 12395 | 0.7 | 0.530555 |
Target: 5'- gCCCGUggGCGACcg-GUCGacgguGAGCaGCu -3' miRNA: 3'- gGGGCGuuCGCUGcuaCAGU-----UUCG-CG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 16801 | 0.69 | 0.541655 |
Target: 5'- aCCgCCGCcGGCGGCGGgccaugCGcAGGCGCc -3' miRNA: 3'- -GG-GGCGuUCGCUGCUaca---GU-UUCGCG- -5' |
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133 | 3' | -52.8 | AC_000006.1 | + | 11010 | 0.69 | 0.564076 |
Target: 5'- gCCUaCGAGCaGACGGUGaagcaGGAGCGCa -3' miRNA: 3'- gGGGcGUUCG-CUGCUACag---UUUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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