miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
133 3' -52.8 AC_000006.1 + 3674 0.66 0.723142
Target:  5'- -gCCGCGgcuGCGGCGGugcUGUCA-AGCGa -3'
miRNA:   3'- ggGGCGUu--CGCUGCU---ACAGUuUCGCg -5'
133 3' -52.8 AC_000006.1 + 5309 0.67 0.655374
Target:  5'- gUCCGCAGGCGGgacaGAggagGgauugCAGGGCGUa -3'
miRNA:   3'- gGGGCGUUCGCUg---CUa---Ca----GUUUCGCG- -5'
133 3' -52.8 AC_000006.1 + 5709 0.68 0.632467
Target:  5'- cCCUCGCAcGUGGCcuccuuUGUCuuGGCGUg -3'
miRNA:   3'- -GGGGCGUuCGCUGcu----ACAGuuUCGCG- -5'
133 3' -52.8 AC_000006.1 + 6266 0.67 0.697432
Target:  5'- aCCCUGCAuaaccGCGGCuGGcgcGUCAggaucgugcccgacGAGCGCa -3'
miRNA:   3'- -GGGGCGUu----CGCUG-CUa--CAGU--------------UUCGCG- -5'
133 3' -52.8 AC_000006.1 + 6436 0.68 0.648507
Target:  5'- aCUCGCGGGCGGCcauugcucgcucguaGggGUUGAGGgGCg -3'
miRNA:   3'- gGGGCGUUCGCUG---------------CuaCAGUUUCgCG- -5'
133 3' -52.8 AC_000006.1 + 6811 0.67 0.712018
Target:  5'- aCUCgGC-GGUGACGAgaacGUCcauGGCGCa -3'
miRNA:   3'- -GGGgCGuUCGCUGCUa---CAGuu-UCGCG- -5'
133 3' -52.8 AC_000006.1 + 7052 0.67 0.666798
Target:  5'- gCCuuGCgGAGCGAgGugugcGUCAGGGCGa -3'
miRNA:   3'- -GGggCG-UUCGCUgCua---CAGUUUCGCg -5'
133 3' -52.8 AC_000006.1 + 8289 0.66 0.734168
Target:  5'- -gCCGCGGuGCGcuuuuagaaGCGGUGUCGcGGaCGCg -3'
miRNA:   3'- ggGGCGUU-CGC---------UGCUACAGUuUC-GCG- -5'
133 3' -52.8 AC_000006.1 + 8350 0.73 0.350542
Target:  5'- gCCCCGCGggcaggGGCGGCaGAggcacGUCGGcguGGCGCu -3'
miRNA:   3'- -GGGGCGU------UCGCUG-CUa----CAGUU---UCGCG- -5'
133 3' -52.8 AC_000006.1 + 8645 0.72 0.396114
Target:  5'- aCCCGCGcgcuccacgguGGCGGCGAgGUCAuucGAGaUGCg -3'
miRNA:   3'- gGGGCGU-----------UCGCUGCUaCAGU---UUC-GCG- -5'
133 3' -52.8 AC_000006.1 + 9197 0.78 0.165071
Target:  5'- uCCCCGCGgcGGCGACGcAUGguuUCGGugacGGCGCg -3'
miRNA:   3'- -GGGGCGU--UCGCUGC-UAC---AGUU----UCGCG- -5'
133 3' -52.8 AC_000006.1 + 9888 0.66 0.745083
Target:  5'- -gCCGCGagaaGGCGcGCGA-GUCGAAGaCGUa -3'
miRNA:   3'- ggGGCGU----UCGC-UGCUaCAGUUUC-GCG- -5'
133 3' -52.8 AC_000006.1 + 10820 0.69 0.575381
Target:  5'- -gCUGCAcGCGGgGGUGUCGcuccggggaAGGCGCc -3'
miRNA:   3'- ggGGCGUuCGCUgCUACAGU---------UUCGCG- -5'
133 3' -52.8 AC_000006.1 + 11010 0.69 0.564076
Target:  5'- gCCUaCGAGCaGACGGUGaagcaGGAGCGCa -3'
miRNA:   3'- gGGGcGUUCG-CUGCUACag---UUUCGCG- -5'
133 3' -52.8 AC_000006.1 + 11286 0.69 0.541655
Target:  5'- aCCCuCGGGCucGGCGAUGUUuagcAGCGCc -3'
miRNA:   3'- gGGGcGUUCG--CUGCUACAGuu--UCGCG- -5'
133 3' -52.8 AC_000006.1 + 11709 0.7 0.508614
Target:  5'- -aCCGUAGGCGGCcuc--CAAGGCGCg -3'
miRNA:   3'- ggGGCGUUCGCUGcuacaGUUUCGCG- -5'
133 3' -52.8 AC_000006.1 + 11774 0.72 0.386698
Target:  5'- aCCCCGCcauaaGGGCGGCGcUG-CAAAGCcaGCc -3'
miRNA:   3'- -GGGGCG-----UUCGCUGCuACaGUUUCG--CG- -5'
133 3' -52.8 AC_000006.1 + 12395 0.7 0.530555
Target:  5'- gCCCGUggGCGACcg-GUCGacgguGAGCaGCu -3'
miRNA:   3'- gGGGCGuuCGCUGcuaCAGU-----UUCG-CG- -5'
133 3' -52.8 AC_000006.1 + 13045 0.75 0.263897
Target:  5'- gCCCGCGAGCGagggcGCGGUggGUCGGAGCc- -3'
miRNA:   3'- gGGGCGUUCGC-----UGCUA--CAGUUUCGcg -5'
133 3' -52.8 AC_000006.1 + 13364 0.72 0.377432
Target:  5'- gCCCCGCugccggucGUGGCGcUGUCGccgcGGCGCg -3'
miRNA:   3'- -GGGGCGuu------CGCUGCuACAGUu---UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.