Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
133 | 3' | -52.8 | AC_000006.1 | + | 33101 | 0.67 | 0.655374 |
Target: 5'- gCCCUGCGAuaugGAUGAUGgCGGAGCGa -3' miRNA: 3'- -GGGGCGUUcg--CUGCUACaGUUUCGCg -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 26241 | 0.71 | 0.476452 |
Target: 5'- uCCCgggcgaagcagCGCAGGCGGCGGcagugGUCuAGGUGCc -3' miRNA: 3'- -GGG-----------GCGUUCGCUGCUa----CAGuUUCGCG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 24921 | 0.69 | 0.562949 |
Target: 5'- -gCUGCGgcgcggauggugcGGCGACGGUGUCu--GUGCu -3' miRNA: 3'- ggGGCGU-------------UCGCUGCUACAGuuuCGCG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 24094 | 0.68 | 0.632467 |
Target: 5'- gUCCG-AGGCGACGGUgcgcucGUCAAAGCcCg -3' miRNA: 3'- gGGGCgUUCGCUGCUA------CAGUUUCGcG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 23573 | 0.67 | 0.700809 |
Target: 5'- gCCCGUGgucAGCGAUGAg--CAGcuuGCGCg -3' miRNA: 3'- gGGGCGU---UCGCUGCUacaGUUu--CGCG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 23290 | 0.66 | 0.734168 |
Target: 5'- gCCCCa-GAGCGAgGAgcgcGUC--GGCGCg -3' miRNA: 3'- -GGGGcgUUCGCUgCUa---CAGuuUCGCG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 22722 | 0.67 | 0.712018 |
Target: 5'- gCCCCG-GGGCcACGG-GUCGgcGCGCu -3' miRNA: 3'- -GGGGCgUUCGcUGCUaCAGUuuCGCG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 21470 | 0.66 | 0.766527 |
Target: 5'- gCCCUGCAgaugAGcCGGCGuAUGU-GGAGCGa -3' miRNA: 3'- -GGGGCGU----UC-GCUGC-UACAgUUUCGCg -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 21006 | 0.73 | 0.359352 |
Target: 5'- gUCCGCAGGCGGCGGaGUC-GGGCcccuGCa -3' miRNA: 3'- gGGGCGUUCGCUGCUaCAGuUUCG----CG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 16852 | 0.69 | 0.541655 |
Target: 5'- cCCgCCGCcGGCGGCGGU-UCAGGcCGCu -3' miRNA: 3'- -GG-GGCGuUCGCUGCUAcAGUUUcGCG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 16801 | 0.69 | 0.541655 |
Target: 5'- aCCgCCGCcGGCGGCGGgccaugCGcAGGCGCc -3' miRNA: 3'- -GG-GGCGuUCGCUGCUaca---GU-UUCGCG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 15910 | 0.68 | 0.643926 |
Target: 5'- gCCCgGCGAGCGGuccucgGUCAggagcAAGCGUa -3' miRNA: 3'- -GGGgCGUUCGCUgcua--CAGU-----UUCGCG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 15835 | 0.68 | 0.621008 |
Target: 5'- gCUCCGC-GGCGGCGcguaaauUGgaaGGGGCGCa -3' miRNA: 3'- -GGGGCGuUCGCUGCu------ACag-UUUCGCG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 15669 | 1.15 | 0.000428 |
Target: 5'- cCCCCGCAAGCGACGAUGUCAAAGCGCa -3' miRNA: 3'- -GGGGCGUUCGCUGCUACAGUUUCGCG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 15500 | 0.66 | 0.723142 |
Target: 5'- cCCCCGCAGGCaggacucgcaGACGAgcgGcCGccGcCGCc -3' miRNA: 3'- -GGGGCGUUCG----------CUGCUa--CaGUuuC-GCG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 14675 | 0.66 | 0.755873 |
Target: 5'- gCgCCGCAGGUGACGuccgggGUGgu-GAGCaGCg -3' miRNA: 3'- -GgGGCGUUCGCUGC------UACaguUUCG-CG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 13364 | 0.72 | 0.377432 |
Target: 5'- gCCCCGCugccggucGUGGCGcUGUCGccgcGGCGCg -3' miRNA: 3'- -GGGGCGuu------CGCUGCuACAGUu---UCGCG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 13045 | 0.75 | 0.263897 |
Target: 5'- gCCCGCGAGCGagggcGCGGUggGUCGGAGCc- -3' miRNA: 3'- gGGGCGUUCGC-----UGCUA--CAGUUUCGcg -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 12395 | 0.7 | 0.530555 |
Target: 5'- gCCCGUggGCGACcg-GUCGacgguGAGCaGCu -3' miRNA: 3'- gGGGCGuuCGCUGcuaCAGU-----UUCG-CG- -5' |
|||||||
133 | 3' | -52.8 | AC_000006.1 | + | 11774 | 0.72 | 0.386698 |
Target: 5'- aCCCCGCcauaaGGGCGGCGcUG-CAAAGCcaGCc -3' miRNA: 3'- -GGGGCG-----UUCGCUGCuACaGUUUCG--CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home