miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13302 5' -53.2 NC_003409.1 + 7186 0.66 0.964395
Target:  5'- -uGUG-UCuGACUCCCaACCAGGgcaccagucugcaGGCCa -3'
miRNA:   3'- cuCAUgAGuCUGAGGG-UGGUCU-------------UCGG- -5'
13302 5' -53.2 NC_003409.1 + 13496 0.69 0.864312
Target:  5'- aGAGauCUCAGGC-CUUugUAGAGGCCa -3'
miRNA:   3'- -CUCauGAGUCUGaGGGugGUCUUCGG- -5'
13302 5' -53.2 NC_003409.1 + 22516 0.74 0.612679
Target:  5'- cAGUGC-CAGAUUgCCACCGGAuaAGCUg -3'
miRNA:   3'- cUCAUGaGUCUGAgGGUGGUCU--UCGG- -5'
13302 5' -53.2 NC_003409.1 + 35995 0.67 0.940196
Target:  5'- gGGGUcCUCuuGAgUCCCugCAGAuccGCCc -3'
miRNA:   3'- -CUCAuGAGu-CUgAGGGugGUCUu--CGG- -5'
13302 5' -53.2 NC_003409.1 + 40342 0.72 0.72741
Target:  5'- cGGG-ACUUcaggauuagAGACUCCCACCAu-GGCCg -3'
miRNA:   3'- -CUCaUGAG---------UCUGAGGGUGGUcuUCGG- -5'
13302 5' -53.2 NC_003409.1 + 42118 0.66 0.961241
Target:  5'- aGAGaUGCUuCAGGCUCU--CCAGGAGUg -3'
miRNA:   3'- -CUC-AUGA-GUCUGAGGguGGUCUUCGg -5'
13302 5' -53.2 NC_003409.1 + 49884 0.68 0.900236
Target:  5'- uGAGUACUCGuGACaacgcgCCCacgccaguACCGGAcGCCu -3'
miRNA:   3'- -CUCAUGAGU-CUGa-----GGG--------UGGUCUuCGG- -5'
13302 5' -53.2 NC_003409.1 + 50029 1.12 0.002747
Target:  5'- cGAGUACUCAGACUCCCACCAGAAGCCu -3'
miRNA:   3'- -CUCAUGAGUCUGAGGGUGGUCUUCGG- -5'
13302 5' -53.2 NC_003409.1 + 63157 0.7 0.804952
Target:  5'- uGAGUACUCAuuGGCacuccagucagUCUCGCCAG-GGCCc -3'
miRNA:   3'- -CUCAUGAGU--CUG-----------AGGGUGGUCuUCGG- -5'
13302 5' -53.2 NC_003409.1 + 63303 0.67 0.930042
Target:  5'- uGAGUACUCaugccccgaAGACUCgCGagUCAGAagaGGCCu -3'
miRNA:   3'- -CUCAUGAG---------UCUGAGgGU--GGUCU---UCGG- -5'
13302 5' -53.2 NC_003409.1 + 64346 0.68 0.900236
Target:  5'- uGAGUAUcCGGcCUaugguuuuUUCACCAGAGGCCa -3'
miRNA:   3'- -CUCAUGaGUCuGA--------GGGUGGUCUUCGG- -5'
13302 5' -53.2 NC_003409.1 + 65366 0.66 0.948913
Target:  5'- ----uUUCAGACUCCUuuGCCGuauggguGGAGCCa -3'
miRNA:   3'- cucauGAGUCUGAGGG--UGGU-------CUUCGG- -5'
13302 5' -53.2 NC_003409.1 + 70749 0.68 0.900236
Target:  5'- aGAGUAUggCGGACUgucaCCCACCcgcccaugggcAGAGGCa -3'
miRNA:   3'- -CUCAUGa-GUCUGA----GGGUGG-----------UCUUCGg -5'
13302 5' -53.2 NC_003409.1 + 78553 0.66 0.957515
Target:  5'- ---cACUCgAGcCUCCCggaaacggacGCCAGGAGCUa -3'
miRNA:   3'- cucaUGAG-UCuGAGGG----------UGGUCUUCGG- -5'
13302 5' -53.2 NC_003409.1 + 79081 0.66 0.961241
Target:  5'- cGGU-CUCcuGGCagCCCGCCGGAauuuuAGCCa -3'
miRNA:   3'- cUCAuGAGu-CUGa-GGGUGGUCU-----UCGG- -5'
13302 5' -53.2 NC_003409.1 + 80559 0.7 0.804038
Target:  5'- ---cGCUCgccuacaAGACUCCCGCCAaaauAGCCg -3'
miRNA:   3'- cucaUGAG-------UCUGAGGGUGGUcu--UCGG- -5'
13302 5' -53.2 NC_003409.1 + 82615 0.7 0.813999
Target:  5'- ---aACUCAGACUCCCugCG--AGCa -3'
miRNA:   3'- cucaUGAGUCUGAGGGugGUcuUCGg -5'
13302 5' -53.2 NC_003409.1 + 85537 0.66 0.957515
Target:  5'- ---cACUgCAGGgUCCCGCCuauAGCCa -3'
miRNA:   3'- cucaUGA-GUCUgAGGGUGGucuUCGG- -5'
13302 5' -53.2 NC_003409.1 + 87667 0.67 0.929508
Target:  5'- -uGUGCUCGcgcguGGCUucCCCGCCGGGAaaccgguGCCg -3'
miRNA:   3'- cuCAUGAGU-----CUGA--GGGUGGUCUU-------CGG- -5'
13302 5' -53.2 NC_003409.1 + 90322 0.66 0.964054
Target:  5'- uGGUGCU-GGACUgCCGCCGGcguccagacgccGGCCa -3'
miRNA:   3'- cUCAUGAgUCUGAgGGUGGUCu-----------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.