miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13302 5' -53.2 NC_003409.1 + 49884 0.68 0.900236
Target:  5'- uGAGUACUCGuGACaacgcgCCCacgccaguACCGGAcGCCu -3'
miRNA:   3'- -CUCAUGAGU-CUGa-----GGG--------UGGUCUuCGG- -5'
13302 5' -53.2 NC_003409.1 + 102855 0.66 0.964734
Target:  5'- --cUGC-CAGGCgCCCGCUAGccaGAGCCu -3'
miRNA:   3'- cucAUGaGUCUGaGGGUGGUC---UUCGG- -5'
13302 5' -53.2 NC_003409.1 + 123491 0.66 0.964734
Target:  5'- aGGGUGCUCuGucagguuCUCCCAUCGacGAcgcugGGCCg -3'
miRNA:   3'- -CUCAUGAGuCu------GAGGGUGGU--CU-----UCGG- -5'
13302 5' -53.2 NC_003409.1 + 40342 0.72 0.72741
Target:  5'- cGGG-ACUUcaggauuagAGACUCCCACCAu-GGCCg -3'
miRNA:   3'- -CUCaUGAG---------UCUGAGGGUGGUcuUCGG- -5'
13302 5' -53.2 NC_003409.1 + 63157 0.7 0.804952
Target:  5'- uGAGUACUCAuuGGCacuccagucagUCUCGCCAG-GGCCc -3'
miRNA:   3'- -CUCAUGAGU--CUG-----------AGGGUGGUCuUCGG- -5'
13302 5' -53.2 NC_003409.1 + 82615 0.7 0.813999
Target:  5'- ---aACUCAGACUCCCugCG--AGCa -3'
miRNA:   3'- cucaUGAGUCUGAGGGugGUcuUCGg -5'
13302 5' -53.2 NC_003409.1 + 125475 0.7 0.840056
Target:  5'- --cUGCUguGGCUCCCGCUgcuGggGCUc -3'
miRNA:   3'- cucAUGAguCUGAGGGUGGu--CuuCGG- -5'
13302 5' -53.2 NC_003409.1 + 132142 0.69 0.856439
Target:  5'- uGGUcCUCuGGACUCCaCGCCAcGgcGCCa -3'
miRNA:   3'- cUCAuGAG-UCUGAGG-GUGGU-CuuCGG- -5'
13302 5' -53.2 NC_003409.1 + 13496 0.69 0.864312
Target:  5'- aGAGauCUCAGGC-CUUugUAGAGGCCa -3'
miRNA:   3'- -CUCauGAGUCUGaGGGugGUCUUCGG- -5'
13302 5' -53.2 NC_003409.1 + 79081 0.66 0.961241
Target:  5'- cGGU-CUCcuGGCagCCCGCCGGAauuuuAGCCa -3'
miRNA:   3'- cUCAuGAGu-CUGa-GGGUGGUCU-----UCGG- -5'
13302 5' -53.2 NC_003409.1 + 42118 0.66 0.961241
Target:  5'- aGAGaUGCUuCAGGCUCU--CCAGGAGUg -3'
miRNA:   3'- -CUC-AUGA-GUCUGAGGguGGUCUUCGg -5'
13302 5' -53.2 NC_003409.1 + 64346 0.68 0.900236
Target:  5'- uGAGUAUcCGGcCUaugguuuuUUCACCAGAGGCCa -3'
miRNA:   3'- -CUCAUGaGUCuGA--------GGGUGGUCUUCGG- -5'
13302 5' -53.2 NC_003409.1 + 110460 0.66 0.961241
Target:  5'- cAGUucGC-CAGACUCCUucagaGCCAGGugagcGCCa -3'
miRNA:   3'- cUCA--UGaGUCUGAGGG-----UGGUCUu----CGG- -5'
13302 5' -53.2 NC_003409.1 + 96417 0.68 0.906699
Target:  5'- --cUGCcuUCcguGugUCCCACCAGggGCg -3'
miRNA:   3'- cucAUG--AGu--CugAGGGUGGUCuuCGg -5'
13302 5' -53.2 NC_003409.1 + 85537 0.66 0.957515
Target:  5'- ---cACUgCAGGgUCCCGCCuauAGCCa -3'
miRNA:   3'- cucaUGA-GUCUgAGGGUGGucuUCGG- -5'
13302 5' -53.2 NC_003409.1 + 7186 0.66 0.964395
Target:  5'- -uGUG-UCuGACUCCCaACCAGGgcaccagucugcaGGCCa -3'
miRNA:   3'- cuCAUgAGuCUGAGGG-UGGUCU-------------UCGG- -5'
13302 5' -53.2 NC_003409.1 + 90659 0.66 0.964734
Target:  5'- aGAGUcCUCAGAUUCCgCGCCcGucuGCg -3'
miRNA:   3'- -CUCAuGAGUCUGAGG-GUGGuCuu-CGg -5'
13302 5' -53.2 NC_003409.1 + 102291 0.67 0.930042
Target:  5'- cGGUGCcUGGGCagcuacagUCCCACCGGcuuGGCCu -3'
miRNA:   3'- cUCAUGaGUCUG--------AGGGUGGUCu--UCGG- -5'
13302 5' -53.2 NC_003409.1 + 65366 0.66 0.948913
Target:  5'- ----uUUCAGACUCCUuuGCCGuauggguGGAGCCa -3'
miRNA:   3'- cucauGAGUCUGAGGG--UGGU-------CUUCGG- -5'
13302 5' -53.2 NC_003409.1 + 107256 0.68 0.893527
Target:  5'- --cUGCaaCAGGCUCCCACCGcGAAGgCu -3'
miRNA:   3'- cucAUGa-GUCUGAGGGUGGU-CUUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.