miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13302 5' -53.2 NC_003409.1 + 90322 0.66 0.964054
Target:  5'- uGGUGCU-GGACUgCCGCCGGcguccagacgccGGCCa -3'
miRNA:   3'- cUCAUGAgUCUGAgGGUGGUCu-----------UCGG- -5'
13302 5' -53.2 NC_003409.1 + 50029 1.12 0.002747
Target:  5'- cGAGUACUCAGACUCCCACCAGAAGCCu -3'
miRNA:   3'- -CUCAUGAGUCUGAGGGUGGUCUUCGG- -5'
13302 5' -53.2 NC_003409.1 + 22516 0.74 0.612679
Target:  5'- cAGUGC-CAGAUUgCCACCGGAuaAGCUg -3'
miRNA:   3'- cUCAUGaGUCUGAgGGUGGUCU--UCGG- -5'
13302 5' -53.2 NC_003409.1 + 110032 0.73 0.644279
Target:  5'- gGGGUACgguggCAGugUUgCGCCGGgcGCCa -3'
miRNA:   3'- -CUCAUGa----GUCugAGgGUGGUCuuCGG- -5'
13302 5' -53.2 NC_003409.1 + 80559 0.7 0.804038
Target:  5'- ---cGCUCgccuacaAGACUCCCGCCAaaauAGCCg -3'
miRNA:   3'- cucaUGAG-------UCUGAGGGUGGUcu--UCGG- -5'
13302 5' -53.2 NC_003409.1 + 113935 0.69 0.871962
Target:  5'- uGGUGC-CGGuuUUCCCACCAacGGCCg -3'
miRNA:   3'- cUCAUGaGUCu-GAGGGUGGUcuUCGG- -5'
13302 5' -53.2 NC_003409.1 + 70749 0.68 0.900236
Target:  5'- aGAGUAUggCGGACUgucaCCCACCcgcccaugggcAGAGGCa -3'
miRNA:   3'- -CUCAUGa-GUCUGA----GGGUGG-----------UCUUCGg -5'
13302 5' -53.2 NC_003409.1 + 87667 0.67 0.929508
Target:  5'- -uGUGCUCGcgcguGGCUucCCCGCCGGGAaaccgguGCCg -3'
miRNA:   3'- cuCAUGAGU-----CUGA--GGGUGGUCUU-------CGG- -5'
13302 5' -53.2 NC_003409.1 + 63303 0.67 0.930042
Target:  5'- uGAGUACUCaugccccgaAGACUCgCGagUCAGAagaGGCCu -3'
miRNA:   3'- -CUCAUGAG---------UCUGAGgGU--GGUCU---UCGG- -5'
13302 5' -53.2 NC_003409.1 + 35995 0.67 0.940196
Target:  5'- gGGGUcCUCuuGAgUCCCugCAGAuccGCCc -3'
miRNA:   3'- -CUCAuGAGu-CUgAGGGugGUCUu--CGG- -5'
13302 5' -53.2 NC_003409.1 + 95663 0.66 0.953552
Target:  5'- aGAGgcGCUCAGACUCgaGCCAGu--CCa -3'
miRNA:   3'- -CUCa-UGAGUCUGAGggUGGUCuucGG- -5'
13302 5' -53.2 NC_003409.1 + 107657 0.66 0.957515
Target:  5'- uGGUACUCcgcugccaGGGCaUCCCAgUCAGcGGGCCg -3'
miRNA:   3'- cUCAUGAG--------UCUG-AGGGU-GGUC-UUCGG- -5'
13302 5' -53.2 NC_003409.1 + 78553 0.66 0.957515
Target:  5'- ---cACUCgAGcCUCCCggaaacggacGCCAGGAGCUa -3'
miRNA:   3'- cucaUGAG-UCuGAGGG----------UGGUCUUCGG- -5'
13302 5' -53.2 NC_003409.1 + 107973 0.66 0.961241
Target:  5'- aGGGaGCUCcagGGGCgugCCCACCGu-GGCCu -3'
miRNA:   3'- -CUCaUGAG---UCUGa--GGGUGGUcuUCGG- -5'
13302 5' -53.2 NC_003409.1 + 13496 0.69 0.864312
Target:  5'- aGAGauCUCAGGC-CUUugUAGAGGCCa -3'
miRNA:   3'- -CUCauGAGUCUGaGGGugGUCUUCGG- -5'
13302 5' -53.2 NC_003409.1 + 132142 0.69 0.856439
Target:  5'- uGGUcCUCuGGACUCCaCGCCAcGgcGCCa -3'
miRNA:   3'- cUCAuGAG-UCUGAGG-GUGGU-CuuCGG- -5'
13302 5' -53.2 NC_003409.1 + 125475 0.7 0.840056
Target:  5'- --cUGCUguGGCUCCCGCUgcuGggGCUc -3'
miRNA:   3'- cucAUGAguCUGAGGGUGGu--CuuCGG- -5'
13302 5' -53.2 NC_003409.1 + 82615 0.7 0.813999
Target:  5'- ---aACUCAGACUCCCugCG--AGCa -3'
miRNA:   3'- cucaUGAGUCUGAGGGugGUcuUCGg -5'
13302 5' -53.2 NC_003409.1 + 63157 0.7 0.804952
Target:  5'- uGAGUACUCAuuGGCacuccagucagUCUCGCCAG-GGCCc -3'
miRNA:   3'- -CUCAUGAGU--CUG-----------AGGGUGGUCuUCGG- -5'
13302 5' -53.2 NC_003409.1 + 90659 0.66 0.964734
Target:  5'- aGAGUcCUCAGAUUCCgCGCCcGucuGCg -3'
miRNA:   3'- -CUCAuGAGUCUGAGG-GUGGuCuu-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.