Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13304 | 3' | -57.5 | NC_003409.1 | + | 51676 | 1.08 | 0.002069 |
Target: 5'- gUUUCCCACACACCACCAACCGGCGGGa -3' miRNA: 3'- -AAAGGGUGUGUGGUGGUUGGCCGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 108990 | 0.78 | 0.233986 |
Target: 5'- --cCCCACGCGCCcggccugcgucCCAGCCGGCGGc -3' miRNA: 3'- aaaGGGUGUGUGGu----------GGUUGGCCGCCc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 24765 | 0.74 | 0.387924 |
Target: 5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3' miRNA: 3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 24825 | 0.74 | 0.387924 |
Target: 5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3' miRNA: 3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 24795 | 0.74 | 0.387924 |
Target: 5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3' miRNA: 3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 24735 | 0.74 | 0.387924 |
Target: 5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3' miRNA: 3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 24705 | 0.74 | 0.387924 |
Target: 5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3' miRNA: 3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 24615 | 0.74 | 0.387924 |
Target: 5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3' miRNA: 3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 24675 | 0.74 | 0.387924 |
Target: 5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3' miRNA: 3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 24645 | 0.74 | 0.387924 |
Target: 5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3' miRNA: 3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 18495 | 0.73 | 0.413468 |
Target: 5'- aUUCCCGCGgGCUGUCGACCauuGGCGGGu -3' miRNA: 3'- aAAGGGUGUgUGGUGGUUGG---CCGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 131231 | 0.73 | 0.42221 |
Target: 5'- -cUCCCAgGCAgCACCAACgCGGCcacacggcgcGGGg -3' miRNA: 3'- aaAGGGUgUGUgGUGGUUG-GCCG----------CCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 111537 | 0.72 | 0.515208 |
Target: 5'- -gUCCCA-AC-CCGCCuuuaucuCCGGCGGGa -3' miRNA: 3'- aaAGGGUgUGuGGUGGuu-----GGCCGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 49181 | 0.71 | 0.534837 |
Target: 5'- -gUCaCAUGCACCGCCGA-CGGUGGGc -3' miRNA: 3'- aaAGgGUGUGUGGUGGUUgGCCGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 87477 | 0.71 | 0.564747 |
Target: 5'- --cCCCGCaaGCGCCuucggcACCGGuuucCCGGCGGGg -3' miRNA: 3'- aaaGGGUG--UGUGG------UGGUU----GGCCGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 24587 | 0.7 | 0.574819 |
Target: 5'- --cCCgGCGCGCCACCcuccCCGGaGGGg -3' miRNA: 3'- aaaGGgUGUGUGGUGGuu--GGCCgCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 57056 | 0.7 | 0.584932 |
Target: 5'- aUUCCCAUGCGacaggagCACCAGCUGGCGu- -3' miRNA: 3'- aAAGGGUGUGUg------GUGGUUGGCCGCcc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 24855 | 0.7 | 0.584932 |
Target: 5'- -aUCCCgGCGCGCCACCcuccCCGGCa-- -3' miRNA: 3'- aaAGGG-UGUGUGGUGGuu--GGCCGccc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 104932 | 0.7 | 0.615446 |
Target: 5'- -aUCCCGC-UGCCugCu-CUGGCGGGc -3' miRNA: 3'- aaAGGGUGuGUGGugGuuGGCCGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 88637 | 0.69 | 0.646071 |
Target: 5'- -cUCCuCAUcaaaugcaugguACACCgaauACCAGCCaGGCGGGa -3' miRNA: 3'- aaAGG-GUG------------UGUGG----UGGUUGG-CCGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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