miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13304 3' -57.5 NC_003409.1 + 18039 0.66 0.836271
Target:  5'- -cUCCCGCucggGCACCACCGGCUaGUGu- -3'
miRNA:   3'- aaAGGGUG----UGUGGUGGUUGGcCGCcc -5'
13304 3' -57.5 NC_003409.1 + 18495 0.73 0.413468
Target:  5'- aUUCCCGCGgGCUGUCGACCauuGGCGGGu -3'
miRNA:   3'- aAAGGGUGUgUGGUGGUUGG---CCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 22342 0.66 0.819464
Target:  5'- --aCCCGCAUAUCAgCuuauCCGGUGGc -3'
miRNA:   3'- aaaGGGUGUGUGGUgGuu--GGCCGCCc -5'
13304 3' -57.5 NC_003409.1 + 24225 0.69 0.656268
Target:  5'- --aCCCauguucugggGCGCGCCAgCggUgGGCGGGg -3'
miRNA:   3'- aaaGGG----------UGUGUGGUgGuuGgCCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 24372 0.66 0.810802
Target:  5'- -gUCCCACGUGCCGCCGcgcgcgcagugcGCgaGGgGGGg -3'
miRNA:   3'- aaAGGGUGUGUGGUGGU------------UGg-CCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24587 0.7 0.574819
Target:  5'- --cCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaaGGgUGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24615 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24645 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24675 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24705 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24735 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24765 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24795 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24825 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24855 0.7 0.584932
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGCa-- -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCGccc -5'
13304 3' -57.5 NC_003409.1 + 27100 0.66 0.825427
Target:  5'- uUUUCCCagaaGCGCACCACagaaacGCCugucguacgcggggGGUGGGg -3'
miRNA:   3'- -AAAGGG----UGUGUGGUGgu----UGG--------------CCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 27942 0.66 0.819464
Target:  5'- -gUCCCuccaguGCACGCCGCUA---GGUGGGa -3'
miRNA:   3'- aaAGGG------UGUGUGGUGGUuggCCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 31070 0.67 0.783883
Target:  5'- ---aCCACGCAUaCACCAuGCgCGGCGGu -3'
miRNA:   3'- aaagGGUGUGUG-GUGGU-UG-GCCGCCc -5'
13304 3' -57.5 NC_003409.1 + 33903 0.67 0.783883
Target:  5'- aUUUUCCGCAUACCAgUggAACCugcgaGCGGGg -3'
miRNA:   3'- -AAAGGGUGUGUGGUgG--UUGGc----CGCCC- -5'
13304 3' -57.5 NC_003409.1 + 35408 0.67 0.793003
Target:  5'- --gCCCAcCugGCCACCuaccGCCGGCu-- -3'
miRNA:   3'- aaaGGGU-GugUGGUGGu---UGGCCGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.