miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13304 3' -57.5 NC_003409.1 + 133612 0.67 0.765243
Target:  5'- --gCCUGUAUGCCACCgAACCGGCccuGGGa -3'
miRNA:   3'- aaaGGGUGUGUGGUGG-UUGGCCG---CCC- -5'
13304 3' -57.5 NC_003409.1 + 133220 0.67 0.783883
Target:  5'- --gCCCagACACACCACUgucuGCUGG-GGGa -3'
miRNA:   3'- aaaGGG--UGUGUGGUGGu---UGGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 133182 0.67 0.774626
Target:  5'- --gCgCugGCGCCGCgGACCGGCcuGGa -3'
miRNA:   3'- aaaGgGugUGUGGUGgUUGGCCGc-CC- -5'
13304 3' -57.5 NC_003409.1 + 132928 0.67 0.792098
Target:  5'- -cUgCCAC-CGCCGCCuucacggcauccgGACCGGCcgcGGGa -3'
miRNA:   3'- aaAgGGUGuGUGGUGG-------------UUGGCCG---CCC- -5'
13304 3' -57.5 NC_003409.1 + 131231 0.73 0.42221
Target:  5'- -cUCCCAgGCAgCACCAACgCGGCcacacggcgcGGGg -3'
miRNA:   3'- aaAGGGUgUGUgGUGGUUG-GCCG----------CCC- -5'
13304 3' -57.5 NC_003409.1 + 131043 0.68 0.736425
Target:  5'- --aCCCACAcCACC-CCAGCgcugGGCGGu -3'
miRNA:   3'- aaaGGGUGU-GUGGuGGUUGg---CCGCCc -5'
13304 3' -57.5 NC_003409.1 + 127030 0.66 0.801979
Target:  5'- -cUCCCGCaACACCuuuACCuccACCGGCa-- -3'
miRNA:   3'- aaAGGGUG-UGUGG---UGGu--UGGCCGccc -5'
13304 3' -57.5 NC_003409.1 + 119774 0.66 0.844401
Target:  5'- --aUCCACACuuuauguugGCCgcguGCCAggcGCCGGCGuGGg -3'
miRNA:   3'- aaaGGGUGUG---------UGG----UGGU---UGGCCGC-CC- -5'
13304 3' -57.5 NC_003409.1 + 118623 0.68 0.746134
Target:  5'- --aCCC-CGCACC-CCAGgaacCCGGCGcGGc -3'
miRNA:   3'- aaaGGGuGUGUGGuGGUU----GGCCGC-CC- -5'
13304 3' -57.5 NC_003409.1 + 116569 0.69 0.656268
Target:  5'- --cCCCGgGCGggACCGACCgaGGCGGGa -3'
miRNA:   3'- aaaGGGUgUGUggUGGUUGG--CCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 111537 0.72 0.515208
Target:  5'- -gUCCCA-AC-CCGCCuuuaucuCCGGCGGGa -3'
miRNA:   3'- aaAGGGUgUGuGGUGGuu-----GGCCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 110428 0.69 0.666446
Target:  5'- --gCCUACcgACAUCGCCAGaagaGGCGGGa -3'
miRNA:   3'- aaaGGGUG--UGUGGUGGUUgg--CCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 110078 0.68 0.745167
Target:  5'- gUUCCUGCGCcugGCCgACCAggcgcucGCCGGUGGc -3'
miRNA:   3'- aAAGGGUGUG---UGG-UGGU-------UGGCCGCCc -5'
13304 3' -57.5 NC_003409.1 + 108990 0.78 0.233986
Target:  5'- --cCCCACGCGCCcggccugcgucCCAGCCGGCGGc -3'
miRNA:   3'- aaaGGGUGUGUGGu----------GGUUGGCCGCCc -5'
13304 3' -57.5 NC_003409.1 + 108926 0.69 0.656268
Target:  5'- --aCCUACACAUCgGCCAgacgcaGCCGGCuccGGGa -3'
miRNA:   3'- aaaGGGUGUGUGG-UGGU------UGGCCG---CCC- -5'
13304 3' -57.5 NC_003409.1 + 106426 0.69 0.676596
Target:  5'- --cCUCACGCACCugCAGa-GGCGGu -3'
miRNA:   3'- aaaGGGUGUGUGGugGUUggCCGCCc -5'
13304 3' -57.5 NC_003409.1 + 104932 0.7 0.615446
Target:  5'- -aUCCCGC-UGCCugCu-CUGGCGGGc -3'
miRNA:   3'- aaAGGGUGuGUGGugGuuGGCCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 95935 0.66 0.801979
Target:  5'- --gCCCACugGCUGCCAAUCaGGUGa- -3'
miRNA:   3'- aaaGGGUGugUGGUGGUUGG-CCGCcc -5'
13304 3' -57.5 NC_003409.1 + 94341 0.69 0.68671
Target:  5'- gUUUCCGCA-GCCcgaCAACCGGCuGGGg -3'
miRNA:   3'- aAAGGGUGUgUGGug-GUUGGCCG-CCC- -5'
13304 3' -57.5 NC_003409.1 + 88637 0.69 0.646071
Target:  5'- -cUCCuCAUcaaaugcaugguACACCgaauACCAGCCaGGCGGGa -3'
miRNA:   3'- aaAGG-GUG------------UGUGG----UGGUUGG-CCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.