Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13304 | 3' | -57.5 | NC_003409.1 | + | 87477 | 0.71 | 0.564747 |
Target: 5'- --cCCCGCaaGCGCCuucggcACCGGuuucCCGGCGGGg -3' miRNA: 3'- aaaGGGUG--UGUGG------UGGUU----GGCCGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 87359 | 0.68 | 0.74999 |
Target: 5'- cUUUCCCACACGCaggguggcgcgucgGCCAcgcccuccGCCGGCGc- -3' miRNA: 3'- -AAAGGGUGUGUGg-------------UGGU--------UGGCCGCcc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 87276 | 0.69 | 0.656268 |
Target: 5'- cUUCCgGCAcCACggcgugACCAACUGGUGGGu -3' miRNA: 3'- aAAGGgUGU-GUGg-----UGGUUGGCCGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 87194 | 0.66 | 0.844401 |
Target: 5'- --gCCgACGCGCCACCcugCGuGUGGGa -3' miRNA: 3'- aaaGGgUGUGUGGUGGuugGC-CGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 86268 | 0.69 | 0.660342 |
Target: 5'- -aUCCCACagACACCGCUGAgCGucaacccagugacguGCGGGa -3' miRNA: 3'- aaAGGGUG--UGUGGUGGUUgGC---------------CGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 81169 | 0.66 | 0.836271 |
Target: 5'- cUUCgC-CGCGCCACUcguCCGGUGGa -3' miRNA: 3'- aAAGgGuGUGUGGUGGuu-GGCCGCCc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 75098 | 0.67 | 0.765243 |
Target: 5'- -cUCUCACACACCACCAAgaGGa--- -3' miRNA: 3'- aaAGGGUGUGUGGUGGUUggCCgccc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 63068 | 0.69 | 0.656268 |
Target: 5'- uUUUCCUAUGCACUuCCAGgacaaGGCGGGg -3' miRNA: 3'- -AAAGGGUGUGUGGuGGUUgg---CCGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 60298 | 0.66 | 0.801979 |
Target: 5'- -cUCCCGcCGCAgCGCCGcCUGGCGa- -3' miRNA: 3'- aaAGGGU-GUGUgGUGGUuGGCCGCcc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 57056 | 0.7 | 0.584932 |
Target: 5'- aUUCCCAUGCGacaggagCACCAGCUGGCGu- -3' miRNA: 3'- aAAGGGUGUGUg------GUGGUUGGCCGCcc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 51676 | 1.08 | 0.002069 |
Target: 5'- gUUUCCCACACACCACCAACCGGCGGGa -3' miRNA: 3'- -AAAGGGUGUGUGGUGGUUGGCCGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 51472 | 0.66 | 0.844401 |
Target: 5'- cUUUUCCACcuACACCcgguUCAGCCGGUcgccaGGGu -3' miRNA: 3'- -AAAGGGUG--UGUGGu---GGUUGGCCG-----CCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 49181 | 0.71 | 0.534837 |
Target: 5'- -gUCaCAUGCACCGCCGA-CGGUGGGc -3' miRNA: 3'- aaAGgGUGUGUGGUGGUUgGCCGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 46710 | 0.67 | 0.755743 |
Target: 5'- -aUCCCACGCucGCCGCCAGCCa----- -3' miRNA: 3'- aaAGGGUGUG--UGGUGGUUGGccgccc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 41769 | 0.66 | 0.836271 |
Target: 5'- -aUCCggUACGCGCCGaaaGACCGGCGa- -3' miRNA: 3'- aaAGG--GUGUGUGGUgg-UUGGCCGCcc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 40362 | 0.67 | 0.774626 |
Target: 5'- -cUCCCACcaugGCCGCCAccGCCGGagaGGu -3' miRNA: 3'- aaAGGGUGug--UGGUGGU--UGGCCg--CCc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 35408 | 0.67 | 0.793003 |
Target: 5'- --gCCCAcCugGCCACCuaccGCCGGCu-- -3' miRNA: 3'- aaaGGGU-GugUGGUGGu---UGGCCGccc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 33903 | 0.67 | 0.783883 |
Target: 5'- aUUUUCCGCAUACCAgUggAACCugcgaGCGGGg -3' miRNA: 3'- -AAAGGGUGUGUGGUgG--UUGGc----CGCCC- -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 31070 | 0.67 | 0.783883 |
Target: 5'- ---aCCACGCAUaCACCAuGCgCGGCGGu -3' miRNA: 3'- aaagGGUGUGUG-GUGGU-UG-GCCGCCc -5' |
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13304 | 3' | -57.5 | NC_003409.1 | + | 27942 | 0.66 | 0.819464 |
Target: 5'- -gUCCCuccaguGCACGCCGCUA---GGUGGGa -3' miRNA: 3'- aaAGGG------UGUGUGGUGGUuggCCGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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