miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13304 3' -57.5 NC_003409.1 + 108926 0.69 0.656268
Target:  5'- --aCCUACACAUCgGCCAgacgcaGCCGGCuccGGGa -3'
miRNA:   3'- aaaGGGUGUGUGG-UGGU------UGGCCG---CCC- -5'
13304 3' -57.5 NC_003409.1 + 87276 0.69 0.656268
Target:  5'- cUUCCgGCAcCACggcgugACCAACUGGUGGGu -3'
miRNA:   3'- aAAGGgUGU-GUGg-----UGGUUGGCCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 132928 0.67 0.792098
Target:  5'- -cUgCCAC-CGCCGCCuucacggcauccgGACCGGCcgcGGGa -3'
miRNA:   3'- aaAgGGUGuGUGGUGG-------------UUGGCCG---CCC- -5'
13304 3' -57.5 NC_003409.1 + 87194 0.66 0.844401
Target:  5'- --gCCgACGCGCCACCcugCGuGUGGGa -3'
miRNA:   3'- aaaGGgUGUGUGGUGGuugGC-CGCCC- -5'
13304 3' -57.5 NC_003409.1 + 110428 0.69 0.666446
Target:  5'- --gCCUACcgACAUCGCCAGaagaGGCGGGa -3'
miRNA:   3'- aaaGGGUG--UGUGGUGGUUgg--CCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 75098 0.67 0.765243
Target:  5'- -cUCUCACACACCACCAAgaGGa--- -3'
miRNA:   3'- aaAGGGUGUGUGGUGGUUggCCgccc -5'
13304 3' -57.5 NC_003409.1 + 27942 0.66 0.819464
Target:  5'- -gUCCCuccaguGCACGCCGCUA---GGUGGGa -3'
miRNA:   3'- aaAGGG------UGUGUGGUGGUuggCCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 63068 0.69 0.656268
Target:  5'- uUUUCCUAUGCACUuCCAGgacaaGGCGGGg -3'
miRNA:   3'- -AAAGGGUGUGUGGuGGUUgg---CCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 40362 0.67 0.774626
Target:  5'- -cUCCCACcaugGCCGCCAccGCCGGagaGGu -3'
miRNA:   3'- aaAGGGUGug--UGGUGGU--UGGCCg--CCc -5'
13304 3' -57.5 NC_003409.1 + 46710 0.67 0.755743
Target:  5'- -aUCCCACGCucGCCGCCAGCCa----- -3'
miRNA:   3'- aaAGGGUGUG--UGGUGGUUGGccgccc -5'
13304 3' -57.5 NC_003409.1 + 106426 0.69 0.676596
Target:  5'- --cCUCACGCACCugCAGa-GGCGGu -3'
miRNA:   3'- aaaGGGUGUGUGGugGUUggCCGCCc -5'
13304 3' -57.5 NC_003409.1 + 133612 0.67 0.765243
Target:  5'- --gCCUGUAUGCCACCgAACCGGCccuGGGa -3'
miRNA:   3'- aaaGGGUGUGUGGUGG-UUGGCCG---CCC- -5'
13304 3' -57.5 NC_003409.1 + 81169 0.66 0.836271
Target:  5'- cUUCgC-CGCGCCACUcguCCGGUGGa -3'
miRNA:   3'- aAAGgGuGUGUGGUGGuu-GGCCGCCc -5'
13304 3' -57.5 NC_003409.1 + 111537 0.72 0.515208
Target:  5'- -gUCCCA-AC-CCGCCuuuaucuCCGGCGGGa -3'
miRNA:   3'- aaAGGGUgUGuGGUGGuu-----GGCCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 18495 0.73 0.413468
Target:  5'- aUUCCCGCGgGCUGUCGACCauuGGCGGGu -3'
miRNA:   3'- aAAGGGUGUgUGGUGGUUGG---CCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 127030 0.66 0.801979
Target:  5'- -cUCCCGCaACACCuuuACCuccACCGGCa-- -3'
miRNA:   3'- aaAGGGUG-UGUGG---UGGu--UGGCCGccc -5'
13304 3' -57.5 NC_003409.1 + 51676 1.08 0.002069
Target:  5'- gUUUCCCACACACCACCAACCGGCGGGa -3'
miRNA:   3'- -AAAGGGUGUGUGGUGGUUGGCCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 118623 0.68 0.746134
Target:  5'- --aCCC-CGCACC-CCAGgaacCCGGCGcGGc -3'
miRNA:   3'- aaaGGGuGUGUGGuGGUU----GGCCGC-CC- -5'
13304 3' -57.5 NC_003409.1 + 87359 0.68 0.74999
Target:  5'- cUUUCCCACACGCaggguggcgcgucgGCCAcgcccuccGCCGGCGc- -3'
miRNA:   3'- -AAAGGGUGUGUGg-------------UGGU--------UGGCCGCcc -5'
13304 3' -57.5 NC_003409.1 + 133182 0.67 0.774626
Target:  5'- --gCgCugGCGCCGCgGACCGGCcuGGa -3'
miRNA:   3'- aaaGgGugUGUGGUGgUUGGCCGc-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.