miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13304 3' -57.5 NC_003409.1 + 127030 0.66 0.801979
Target:  5'- -cUCCCGCaACACCuuuACCuccACCGGCa-- -3'
miRNA:   3'- aaAGGGUG-UGUGG---UGGu--UGGCCGccc -5'
13304 3' -57.5 NC_003409.1 + 95935 0.66 0.801979
Target:  5'- --gCCCACugGCUGCCAAUCaGGUGa- -3'
miRNA:   3'- aaaGGGUGugUGGUGGUUGG-CCGCcc -5'
13304 3' -57.5 NC_003409.1 + 35408 0.67 0.793003
Target:  5'- --gCCCAcCugGCCACCuaccGCCGGCu-- -3'
miRNA:   3'- aaaGGGU-GugUGGUGGu---UGGCCGccc -5'
13304 3' -57.5 NC_003409.1 + 33903 0.67 0.783883
Target:  5'- aUUUUCCGCAUACCAgUggAACCugcgaGCGGGg -3'
miRNA:   3'- -AAAGGGUGUGUGGUgG--UUGGc----CGCCC- -5'
13304 3' -57.5 NC_003409.1 + 31070 0.67 0.783883
Target:  5'- ---aCCACGCAUaCACCAuGCgCGGCGGu -3'
miRNA:   3'- aaagGGUGUGUG-GUGGU-UG-GCCGCCc -5'
13304 3' -57.5 NC_003409.1 + 131231 0.73 0.42221
Target:  5'- -cUCCCAgGCAgCACCAACgCGGCcacacggcgcGGGg -3'
miRNA:   3'- aaAGGGUgUGUgGUGGUUG-GCCG----------CCC- -5'
13304 3' -57.5 NC_003409.1 + 49181 0.71 0.534837
Target:  5'- -gUCaCAUGCACCGCCGA-CGGUGGGc -3'
miRNA:   3'- aaAGgGUGUGUGGUGGUUgGCCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 87477 0.71 0.564747
Target:  5'- --cCCCGCaaGCGCCuucggcACCGGuuucCCGGCGGGg -3'
miRNA:   3'- aaaGGGUG--UGUGG------UGGUU----GGCCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 24587 0.7 0.574819
Target:  5'- --cCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaaGGgUGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24855 0.7 0.584932
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGCa-- -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCGccc -5'
13304 3' -57.5 NC_003409.1 + 57056 0.7 0.584932
Target:  5'- aUUCCCAUGCGacaggagCACCAGCUGGCGu- -3'
miRNA:   3'- aAAGGGUGUGUg------GUGGUUGGCCGCcc -5'
13304 3' -57.5 NC_003409.1 + 24825 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24795 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24765 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24735 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24705 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24675 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24645 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 24615 0.74 0.387924
Target:  5'- -aUCCCgGCGCGCCACCcuccCCGGaGGGg -3'
miRNA:   3'- aaAGGG-UGUGUGGUGGuu--GGCCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 119774 0.66 0.844401
Target:  5'- --aUCCACACuuuauguugGCCgcguGCCAggcGCCGGCGuGGg -3'
miRNA:   3'- aaaGGGUGUG---------UGG----UGGU---UGGCCGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.