miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13304 3' -57.5 NC_003409.1 + 116569 0.69 0.656268
Target:  5'- --cCCCGgGCGggACCGACCgaGGCGGGa -3'
miRNA:   3'- aaaGGGUgUGUggUGGUUGG--CCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 133612 0.67 0.765243
Target:  5'- --gCCUGUAUGCCACCgAACCGGCccuGGGa -3'
miRNA:   3'- aaaGGGUGUGUGGUGG-UUGGCCG---CCC- -5'
13304 3' -57.5 NC_003409.1 + 87359 0.68 0.74999
Target:  5'- cUUUCCCACACGCaggguggcgcgucgGCCAcgcccuccGCCGGCGc- -3'
miRNA:   3'- -AAAGGGUGUGUGg-------------UGGU--------UGGCCGCcc -5'
13304 3' -57.5 NC_003409.1 + 118623 0.68 0.746134
Target:  5'- --aCCC-CGCACC-CCAGgaacCCGGCGcGGc -3'
miRNA:   3'- aaaGGGuGUGUGGuGGUU----GGCCGC-CC- -5'
13304 3' -57.5 NC_003409.1 + 110078 0.68 0.745167
Target:  5'- gUUCCUGCGCcugGCCgACCAggcgcucGCCGGUGGc -3'
miRNA:   3'- aAAGGGUGUG---UGG-UGGU-------UGGCCGCCc -5'
13304 3' -57.5 NC_003409.1 + 94341 0.69 0.68671
Target:  5'- gUUUCCGCA-GCCcgaCAACCGGCuGGGg -3'
miRNA:   3'- aAAGGGUGUgUGGug-GUUGGCCG-CCC- -5'
13304 3' -57.5 NC_003409.1 + 131043 0.68 0.736425
Target:  5'- --aCCCACAcCACC-CCAGCgcugGGCGGu -3'
miRNA:   3'- aaaGGGUGU-GUGGuGGUUGg---CCGCCc -5'
13304 3' -57.5 NC_003409.1 + 86268 0.69 0.660342
Target:  5'- -aUCCCACagACACCGCUGAgCGucaacccagugacguGCGGGa -3'
miRNA:   3'- aaAGGGUG--UGUGGUGGUUgGC---------------CGCCC- -5'
13304 3' -57.5 NC_003409.1 + 24225 0.69 0.656268
Target:  5'- --aCCCauguucugggGCGCGCCAgCggUgGGCGGGg -3'
miRNA:   3'- aaaGGG----------UGUGUGGUgGuuGgCCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 133182 0.67 0.774626
Target:  5'- --gCgCugGCGCCGCgGACCGGCcuGGa -3'
miRNA:   3'- aaaGgGugUGUGGUGgUUGGCCGc-CC- -5'
13304 3' -57.5 NC_003409.1 + 31070 0.67 0.783883
Target:  5'- ---aCCACGCAUaCACCAuGCgCGGCGGu -3'
miRNA:   3'- aaagGGUGUGUG-GUGGU-UG-GCCGCCc -5'
13304 3' -57.5 NC_003409.1 + 33903 0.67 0.783883
Target:  5'- aUUUUCCGCAUACCAgUggAACCugcgaGCGGGg -3'
miRNA:   3'- -AAAGGGUGUGUGGUgG--UUGGc----CGCCC- -5'
13304 3' -57.5 NC_003409.1 + 18039 0.66 0.836271
Target:  5'- -cUCCCGCucggGCACCACCGGCUaGUGu- -3'
miRNA:   3'- aaAGGGUG----UGUGGUGGUUGGcCGCcc -5'
13304 3' -57.5 NC_003409.1 + 81169 0.66 0.836271
Target:  5'- cUUCgC-CGCGCCACUcguCCGGUGGa -3'
miRNA:   3'- aAAGgGuGUGUGGUGGuu-GGCCGCCc -5'
13304 3' -57.5 NC_003409.1 + 27100 0.66 0.825427
Target:  5'- uUUUCCCagaaGCGCACCACagaaacGCCugucguacgcggggGGUGGGg -3'
miRNA:   3'- -AAAGGG----UGUGUGGUGgu----UGG--------------CCGCCC- -5'
13304 3' -57.5 NC_003409.1 + 24372 0.66 0.810802
Target:  5'- -gUCCCACGUGCCGCCGcgcgcgcagugcGCgaGGgGGGg -3'
miRNA:   3'- aaAGGGUGUGUGGUGGU------------UGg-CCgCCC- -5'
13304 3' -57.5 NC_003409.1 + 60298 0.66 0.801979
Target:  5'- -cUCCCGcCGCAgCGCCGcCUGGCGa- -3'
miRNA:   3'- aaAGGGU-GUGUgGUGGUuGGCCGCcc -5'
13304 3' -57.5 NC_003409.1 + 127030 0.66 0.801979
Target:  5'- -cUCCCGCaACACCuuuACCuccACCGGCa-- -3'
miRNA:   3'- aaAGGGUG-UGUGG---UGGu--UGGCCGccc -5'
13304 3' -57.5 NC_003409.1 + 95935 0.66 0.801979
Target:  5'- --gCCCACugGCUGCCAAUCaGGUGa- -3'
miRNA:   3'- aaaGGGUGugUGGUGGUUGG-CCGCcc -5'
13304 3' -57.5 NC_003409.1 + 35408 0.67 0.793003
Target:  5'- --gCCCAcCugGCCACCuaccGCCGGCu-- -3'
miRNA:   3'- aaaGGGU-GugUGGUGGu---UGGCCGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.