miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13305 3' -54 NC_003409.1 + 129235 0.66 0.937213
Target:  5'- uGUaGGCCAUGGCGGCCgaGGAUu-- -3'
miRNA:   3'- cCGaUCGGUAUCGCCGGagCUUAcuu -5'
13305 3' -54 NC_003409.1 + 127542 0.66 0.926671
Target:  5'- cGGCgcguGCCAUcGGUGGCCaUCGGcgGu- -3'
miRNA:   3'- -CCGau--CGGUA-UCGCCGG-AGCUuaCuu -5'
13305 3' -54 NC_003409.1 + 68835 0.66 0.915101
Target:  5'- cGCUGGCCucucuUGGUGGCCgacacUCGcGAUGGc -3'
miRNA:   3'- cCGAUCGGu----AUCGCCGG-----AGC-UUACUu -5'
13305 3' -54 NC_003409.1 + 85075 0.67 0.881023
Target:  5'- cGGCaGGCUGUGGUGGCUgCGAuaacggaGUGGAg -3'
miRNA:   3'- -CCGaUCGGUAUCGCCGGaGCU-------UACUU- -5'
13305 3' -54 NC_003409.1 + 128796 0.68 0.866715
Target:  5'- aGGUcaugGGCCA-AGgGGCCUUGAAUaGAAg -3'
miRNA:   3'- -CCGa---UCGGUaUCgCCGGAGCUUA-CUU- -5'
13305 3' -54 NC_003409.1 + 97140 0.69 0.825275
Target:  5'- cGGUUuauccaGGCCAaGGCGGCCg-GggUGAc -3'
miRNA:   3'- -CCGA------UCGGUaUCGCCGGagCuuACUu -5'
13305 3' -54 NC_003409.1 + 79163 0.7 0.778167
Target:  5'- uGCUGGCCuUGGCGGUCggCGAgauuaccGUGGAc -3'
miRNA:   3'- cCGAUCGGuAUCGCCGGa-GCU-------UACUU- -5'
13305 3' -54 NC_003409.1 + 25933 0.74 0.530278
Target:  5'- cGGUUGGCCGgcGCGGCgUCGGuAUGGc -3'
miRNA:   3'- -CCGAUCGGUauCGCCGgAGCU-UACUu -5'
13305 3' -54 NC_003409.1 + 52855 1.08 0.003523
Target:  5'- cGGCUAGCCAUAGCGGCCUCGAAUGAAc -3'
miRNA:   3'- -CCGAUCGGUAUCGCCGGAGCUUACUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.