Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13306 | 5' | -61.7 | NC_003409.1 | + | 95187 | 0.66 | 0.640386 |
Target: 5'- aCAGCAGCaaacacugcugaCGCGCaGAUCCauuccaGCCUCCGGu -3' miRNA: 3'- -GUCGUCG------------GUGUGgCUAGG------CGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 9777 | 0.66 | 0.610603 |
Target: 5'- cCAGCGGacaCACGCCGugGUCuUGCUCUCGGa -3' miRNA: 3'- -GUCGUCg--GUGUGGC--UAG-GCGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24768 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24798 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24828 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24858 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24888 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24918 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24948 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 24978 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 25008 | 0.66 | 0.600696 |
Target: 5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3' miRNA: 3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5' |
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13306 | 5' | -61.7 | NC_003409.1 | + | 107506 | 0.66 | 0.640386 |
Target: 5'- uGGCAGCggaguaccaACGCCGugGUUCGCCCCUu- -3' miRNA: 3'- gUCGUCGg--------UGUGGC--UAGGCGGGGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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