Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13306 | 5' | -61.7 | NC_003409.1 | + | 87795 | 0.7 | 0.389438 |
Target: 5'- cUAGCAGCCA-GCUGAauccugCUGCCCCCa- -3' miRNA: 3'- -GUCGUCGGUgUGGCUa-----GGCGGGGGcu -5' |
|||||||
13306 | 5' | -61.7 | NC_003409.1 | + | 95187 | 0.66 | 0.640386 |
Target: 5'- aCAGCAGCaaacacugcugaCGCGCaGAUCCauuccaGCCUCCGGu -3' miRNA: 3'- -GUCGUCG------------GUGUGgCUAGG------CGGGGGCU- -5' |
|||||||
13306 | 5' | -61.7 | NC_003409.1 | + | 102478 | 0.69 | 0.476016 |
Target: 5'- -uGCAGCgcgugUACGCCGcgCUGCCCUCGc -3' miRNA: 3'- guCGUCG-----GUGUGGCuaGGCGGGGGCu -5' |
|||||||
13306 | 5' | -61.7 | NC_003409.1 | + | 107196 | 0.71 | 0.342685 |
Target: 5'- gCAGUGGCC-CACUuGUCCGCgCCCUGGu -3' miRNA: 3'- -GUCGUCGGuGUGGcUAGGCG-GGGGCU- -5' |
|||||||
13306 | 5' | -61.7 | NC_003409.1 | + | 107506 | 0.66 | 0.640386 |
Target: 5'- uGGCAGCggaguaccaACGCCGugGUUCGCCCCUu- -3' miRNA: 3'- gUCGUCGg--------UGUGGC--UAGGCGGGGGcu -5' |
|||||||
13306 | 5' | -61.7 | NC_003409.1 | + | 107800 | 0.72 | 0.286865 |
Target: 5'- gCAGCAgGCCACGgUGggCaCGCCCCUGGa -3' miRNA: 3'- -GUCGU-CGGUGUgGCuaG-GCGGGGGCU- -5' |
|||||||
13306 | 5' | -61.7 | NC_003409.1 | + | 108416 | 0.69 | 0.466917 |
Target: 5'- aAGCAGCgagcaaACACUGAgaCCGCUCUCGAg -3' miRNA: 3'- gUCGUCGg-----UGUGGCUa-GGCGGGGGCU- -5' |
|||||||
13306 | 5' | -61.7 | NC_003409.1 | + | 110023 | 0.67 | 0.561351 |
Target: 5'- uGGCAGUguUGCGCCGGgcgccaCCGCCuCCCGc -3' miRNA: 3'- gUCGUCG--GUGUGGCUa-----GGCGG-GGGCu -5' |
|||||||
13306 | 5' | -61.7 | NC_003409.1 | + | 127888 | 0.68 | 0.532307 |
Target: 5'- aGGCAGCUGCGCCacgaagcaGUCaCGUCCCCa- -3' miRNA: 3'- gUCGUCGGUGUGGc-------UAG-GCGGGGGcu -5' |
|||||||
13306 | 5' | -61.7 | NC_003409.1 | + | 133686 | 0.69 | 0.466012 |
Target: 5'- cCGGUugaAGCCuGCACCGccagcgguagcagGUCUGCCCCCa- -3' miRNA: 3'- -GUCG---UCGG-UGUGGC-------------UAGGCGGGGGcu -5' |
|||||||
13306 | 5' | -61.7 | NC_003409.1 | + | 134283 | 0.7 | 0.395158 |
Target: 5'- aCAGCccagugacgucguaGGCCAUGCCuaGAgggcgcaCCGCCCCCGGg -3' miRNA: 3'- -GUCG--------------UCGGUGUGG--CUa------GGCGGGGGCU- -5' |
|||||||
13306 | 5' | -61.7 | NC_003409.1 | + | 134495 | 0.68 | 0.522743 |
Target: 5'- uCGGCAGCCugACUacaGAgggUGUCCCCGGg -3' miRNA: 3'- -GUCGUCGGugUGG---CUag-GCGGGGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home