miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13306 5' -61.7 NC_003409.1 + 9777 0.66 0.610603
Target:  5'- cCAGCGGacaCACGCCGugGUCuUGCUCUCGGa -3'
miRNA:   3'- -GUCGUCg--GUGUGGC--UAG-GCGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 11652 0.77 0.150491
Target:  5'- aCGGCAaCCACGCCGggUCGCCCCgGGg -3'
miRNA:   3'- -GUCGUcGGUGUGGCuaGGCGGGGgCU- -5'
13306 5' -61.7 NC_003409.1 + 24768 0.66 0.600696
Target:  5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3'
miRNA:   3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 24798 0.66 0.600696
Target:  5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3'
miRNA:   3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 24828 0.66 0.600696
Target:  5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3'
miRNA:   3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 24858 0.66 0.600696
Target:  5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3'
miRNA:   3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 24888 0.66 0.600696
Target:  5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3'
miRNA:   3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 24918 0.66 0.600696
Target:  5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3'
miRNA:   3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 24948 0.66 0.600696
Target:  5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3'
miRNA:   3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 24978 0.66 0.600696
Target:  5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3'
miRNA:   3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 25008 0.66 0.600696
Target:  5'- aGGguGgCGCGCCGGgaUCCcCCUCCGGg -3'
miRNA:   3'- gUCguCgGUGUGGCU--AGGcGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 26787 0.67 0.558425
Target:  5'- aCGGCGcGCCcCGCCcuuccuucccuccgGAUCCGCCCacaCCGGa -3'
miRNA:   3'- -GUCGU-CGGuGUGG--------------CUAGGCGGG---GGCU- -5'
13306 5' -61.7 NC_003409.1 + 31346 0.69 0.431459
Target:  5'- gCAGCAGCCGCAguaGAUCCacacuacagGCCCCaCGc -3'
miRNA:   3'- -GUCGUCGGUGUgg-CUAGG---------CGGGG-GCu -5'
13306 5' -61.7 NC_003409.1 + 45589 0.79 0.105742
Target:  5'- uGGCuGCCACACUGcAUCCGCUCCUGGc -3'
miRNA:   3'- gUCGuCGGUGUGGC-UAGGCGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 52846 0.68 0.513246
Target:  5'- aUAGCGGCCucgaaugaACACCaGAUCCuCCUUCGAc -3'
miRNA:   3'- -GUCGUCGG--------UGUGG-CUAGGcGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 53150 0.69 0.448995
Target:  5'- gAGC-GCCAUACC-AUCgCGCCCCgGGa -3'
miRNA:   3'- gUCGuCGGUGUGGcUAG-GCGGGGgCU- -5'
13306 5' -61.7 NC_003409.1 + 53370 1.08 0.000866
Target:  5'- aCAGCAGCCACACCGAUCCGCCCCCGAg -3'
miRNA:   3'- -GUCGUCGGUGUGGCUAGGCGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 55988 0.67 0.590811
Target:  5'- aGGUggaGGCUugA-CGAUuuGCCCCCGGu -3'
miRNA:   3'- gUCG---UCGGugUgGCUAggCGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 75287 0.66 0.600696
Target:  5'- aAGgGGUgACGCCGucccagCCGCCCCUa- -3'
miRNA:   3'- gUCgUCGgUGUGGCua----GGCGGGGGcu -5'
13306 5' -61.7 NC_003409.1 + 82664 0.68 0.503821
Target:  5'- gCAGC-GCgACACUG-UCCGCCCCg-- -3'
miRNA:   3'- -GUCGuCGgUGUGGCuAGGCGGGGgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.