miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13306 5' -61.7 NC_003409.1 + 102478 0.69 0.476016
Target:  5'- -uGCAGCgcgugUACGCCGcgCUGCCCUCGc -3'
miRNA:   3'- guCGUCG-----GUGUGGCuaGGCGGGGGCu -5'
13306 5' -61.7 NC_003409.1 + 108416 0.69 0.466917
Target:  5'- aAGCAGCgagcaaACACUGAgaCCGCUCUCGAg -3'
miRNA:   3'- gUCGUCGg-----UGUGGCUa-GGCGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 133686 0.69 0.466012
Target:  5'- cCGGUugaAGCCuGCACCGccagcgguagcagGUCUGCCCCCa- -3'
miRNA:   3'- -GUCG---UCGG-UGUGGC-------------UAGGCGGGGGcu -5'
13306 5' -61.7 NC_003409.1 + 53150 0.69 0.448995
Target:  5'- gAGC-GCCAUACC-AUCgCGCCCCgGGa -3'
miRNA:   3'- gUCGuCGGUGUGGcUAG-GCGGGGgCU- -5'
13306 5' -61.7 NC_003409.1 + 31346 0.69 0.431459
Target:  5'- gCAGCAGCCGCAguaGAUCCacacuacagGCCCCaCGc -3'
miRNA:   3'- -GUCGUCGGUGUgg-CUAGG---------CGGGG-GCu -5'
13306 5' -61.7 NC_003409.1 + 134283 0.7 0.395158
Target:  5'- aCAGCccagugacgucguaGGCCAUGCCuaGAgggcgcaCCGCCCCCGGg -3'
miRNA:   3'- -GUCG--------------UCGGUGUGG--CUa------GGCGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 87795 0.7 0.389438
Target:  5'- cUAGCAGCCA-GCUGAauccugCUGCCCCCa- -3'
miRNA:   3'- -GUCGUCGGUgUGGCUa-----GGCGGGGGcu -5'
13306 5' -61.7 NC_003409.1 + 107196 0.71 0.342685
Target:  5'- gCAGUGGCC-CACUuGUCCGCgCCCUGGu -3'
miRNA:   3'- -GUCGUCGGuGUGGcUAGGCG-GGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 107800 0.72 0.286865
Target:  5'- gCAGCAgGCCACGgUGggCaCGCCCCUGGa -3'
miRNA:   3'- -GUCGU-CGGUGUgGCuaG-GCGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 11652 0.77 0.150491
Target:  5'- aCGGCAaCCACGCCGggUCGCCCCgGGg -3'
miRNA:   3'- -GUCGUcGGUGUGGCuaGGCGGGGgCU- -5'
13306 5' -61.7 NC_003409.1 + 45589 0.79 0.105742
Target:  5'- uGGCuGCCACACUGcAUCCGCUCCUGGc -3'
miRNA:   3'- gUCGuCGGUGUGGC-UAGGCGGGGGCU- -5'
13306 5' -61.7 NC_003409.1 + 53370 1.08 0.000866
Target:  5'- aCAGCAGCCACACCGAUCCGCCCCCGAg -3'
miRNA:   3'- -GUCGUCGGUGUGGCUAGGCGGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.