Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13310 | 5' | -48.4 | NC_003409.1 | + | 118708 | 0.68 | 0.995751 |
Target: 5'- aGGAAC-CCGucCUGgcaCACCccaGGAAACCa -3' miRNA: 3'- -UCUUGaGGCu-GACaa-GUGG---UCUUUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 12283 | 0.68 | 0.993266 |
Target: 5'- aAGAGuCUCUGGcCUGggUGCgGGggGCCg -3' miRNA: 3'- -UCUU-GAGGCU-GACaaGUGgUCuuUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 24301 | 0.67 | 0.996947 |
Target: 5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3' miRNA: 3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 24341 | 0.67 | 0.996947 |
Target: 5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3' miRNA: 3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 24381 | 0.67 | 0.996947 |
Target: 5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3' miRNA: 3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 24421 | 0.67 | 0.996947 |
Target: 5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3' miRNA: 3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 24461 | 0.67 | 0.996947 |
Target: 5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3' miRNA: 3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 24501 | 0.67 | 0.996947 |
Target: 5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3' miRNA: 3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 24541 | 0.67 | 0.996947 |
Target: 5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3' miRNA: 3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 68096 | 0.67 | 0.997431 |
Target: 5'- uGGGC-CCGuCUG---GCCAGAGGCCu -3' miRNA: 3'- uCUUGaGGCuGACaagUGGUCUUUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 24261 | 0.67 | 0.996947 |
Target: 5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3' miRNA: 3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 18739 | 0.68 | 0.995751 |
Target: 5'- --cGC-CCGACUGggCACCAacauAACCg -3' miRNA: 3'- ucuUGaGGCUGACaaGUGGUcu--UUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 73936 | 0.66 | 0.999341 |
Target: 5'- aAGAGCuUCCgGGCgg-UCAUgaCGGAGACCa -3' miRNA: 3'- -UCUUG-AGG-CUGacaAGUG--GUCUUUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 84993 | 0.72 | 0.95194 |
Target: 5'- -uGACUCCGACcuggaugGUUCAUCgcaAGGAGCCc -3' miRNA: 3'- ucUUGAGGCUGa------CAAGUGG---UCUUUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 96421 | 0.7 | 0.978488 |
Target: 5'- ---cUUCCGugUGUccCACCAGggGCg -3' miRNA: 3'- ucuuGAGGCugACAa-GUGGUCuuUGg -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 74068 | 0.7 | 0.980814 |
Target: 5'- -aGGCUuuGACcGU--GCCAGAAGCCg -3' miRNA: 3'- ucUUGAggCUGaCAagUGGUCUUUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 59082 | 0.7 | 0.982946 |
Target: 5'- -cGGCgCCGACg--UCGCCAGAGGCa -3' miRNA: 3'- ucUUGaGGCUGacaAGUGGUCUUUGg -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 51746 | 0.69 | 0.988125 |
Target: 5'- cGGAgUCCGACcGUUgacgggguaucgcCGCCAGAGggcGCCg -3' miRNA: 3'- uCUUgAGGCUGaCAA-------------GUGGUCUU---UGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 86126 | 0.69 | 0.989734 |
Target: 5'- uGGGAUUgCGGCUGUggUUGCCAGguAUCg -3' miRNA: 3'- -UCUUGAgGCUGACA--AGUGGUCuuUGG- -5' |
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13310 | 5' | -48.4 | NC_003409.1 | + | 23481 | 0.69 | 0.992217 |
Target: 5'- uAGAACUCCcaaGCUGaUUgGCCcagagcGGGAACCa -3' miRNA: 3'- -UCUUGAGGc--UGAC-AAgUGG------UCUUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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