miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13310 5' -48.4 NC_003409.1 + 64347 0.72 0.937921
Target:  5'- gAGua-UCCGGCcuaugGUuuuuUCACCAGAGGCCa -3'
miRNA:   3'- -UCuugAGGCUGa----CA----AGUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 68096 0.67 0.997431
Target:  5'- uGGGC-CCGuCUG---GCCAGAGGCCu -3'
miRNA:   3'- uCUUGaGGCuGACaagUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 73936 0.66 0.999341
Target:  5'- aAGAGCuUCCgGGCgg-UCAUgaCGGAGACCa -3'
miRNA:   3'- -UCUUG-AGG-CUGacaAGUG--GUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 74068 0.7 0.980814
Target:  5'- -aGGCUuuGACcGU--GCCAGAAGCCg -3'
miRNA:   3'- ucUUGAggCUGaCAagUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 79244 0.67 0.996947
Target:  5'- -aAAUUCCGGCgGgcUGCCAgGAGACCg -3'
miRNA:   3'- ucUUGAGGCUGaCaaGUGGU-CUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 82423 0.66 0.998488
Target:  5'- uGGGAUUcccugggCCGACUGggUACCAcGGAugCg -3'
miRNA:   3'- -UCUUGA-------GGCUGACaaGUGGU-CUUugG- -5'
13310 5' -48.4 NC_003409.1 + 84993 0.72 0.95194
Target:  5'- -uGACUCCGACcuggaugGUUCAUCgcaAGGAGCCc -3'
miRNA:   3'- ucUUGAGGCUGa------CAAGUGG---UCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 85585 0.66 0.999186
Target:  5'- aAGcACUUuuuuaGACUG-UC-CCAGAAACCa -3'
miRNA:   3'- -UCuUGAGg----CUGACaAGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 86126 0.69 0.989734
Target:  5'- uGGGAUUgCGGCUGUggUUGCCAGguAUCg -3'
miRNA:   3'- -UCUUGAgGCUGACA--AGUGGUCuuUGG- -5'
13310 5' -48.4 NC_003409.1 + 88031 0.71 0.963661
Target:  5'- aGGGGuCUCCGGCg--UCGCaCAGAcGCCg -3'
miRNA:   3'- -UCUU-GAGGCUGacaAGUG-GUCUuUGG- -5'
13310 5' -48.4 NC_003409.1 + 88258 0.66 0.999341
Target:  5'- --uGCUCCGugUGgaUACCAGuGAAUg -3'
miRNA:   3'- ucuUGAGGCugACaaGUGGUC-UUUGg -5'
13310 5' -48.4 NC_003409.1 + 96421 0.7 0.978488
Target:  5'- ---cUUCCGugUGUccCACCAGggGCg -3'
miRNA:   3'- ucuuGAGGCugACAa-GUGGUCuuUGg -5'
13310 5' -48.4 NC_003409.1 + 97094 0.67 0.997849
Target:  5'- uGGACaUCCGGagGUUC-CUGGAAGCCa -3'
miRNA:   3'- uCUUG-AGGCUgaCAAGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 98152 0.67 0.998209
Target:  5'- cAGGGCgCCGuuUGUagACCAG-AGCCa -3'
miRNA:   3'- -UCUUGaGGCugACAagUGGUCuUUGG- -5'
13310 5' -48.4 NC_003409.1 + 100536 0.74 0.881614
Target:  5'- ---uCUCCGugUGa--ACCAGAGACCa -3'
miRNA:   3'- ucuuGAGGCugACaagUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 103833 0.67 0.998338
Target:  5'- cGAACUCCGuuuugucccacugacGCUGgcaggccuCCGGAAACUg -3'
miRNA:   3'- uCUUGAGGC---------------UGACaagu----GGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 108238 0.72 0.956097
Target:  5'- cGAAgUCCGcccGCUGUagCGCCAGAAguuugGCCu -3'
miRNA:   3'- uCUUgAGGC---UGACAa-GUGGUCUU-----UGG- -5'
13310 5' -48.4 NC_003409.1 + 115738 0.69 0.992217
Target:  5'- aGGAGCUCUGAgCUcGUggACCAGAuAUCu -3'
miRNA:   3'- -UCUUGAGGCU-GA-CAagUGGUCUuUGG- -5'
13310 5' -48.4 NC_003409.1 + 118474 0.67 0.998107
Target:  5'- aGGAAC-CCGGCgcgGcgCACCccagccuccuccccGGGAACCu -3'
miRNA:   3'- -UCUUGaGGCUGa--CaaGUGG--------------UCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 118520 0.71 0.967079
Target:  5'- aGGAAC-CCGGCgcgGcgCACCccAGGAACCc -3'
miRNA:   3'- -UCUUGaGGCUGa--CaaGUGG--UCUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.