miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13310 5' -48.4 NC_003409.1 + 12283 0.68 0.993266
Target:  5'- aAGAGuCUCUGGcCUGggUGCgGGggGCCg -3'
miRNA:   3'- -UCUU-GAGGCU-GACaaGUGgUCuuUGG- -5'
13310 5' -48.4 NC_003409.1 + 18739 0.68 0.995751
Target:  5'- --cGC-CCGACUGggCACCAacauAACCg -3'
miRNA:   3'- ucuUGaGGCUGACaaGUGGUcu--UUGG- -5'
13310 5' -48.4 NC_003409.1 + 23481 0.69 0.992217
Target:  5'- uAGAACUCCcaaGCUGaUUgGCCcagagcGGGAACCa -3'
miRNA:   3'- -UCUUGAGGc--UGAC-AAgUGG------UCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24261 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24301 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24341 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24381 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24421 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24461 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24501 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24541 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 25963 0.69 0.992217
Target:  5'- aAGAACg-UGACgGUUCAuCCGGAGACg -3'
miRNA:   3'- -UCUUGagGCUGaCAAGU-GGUCUUUGg -5'
13310 5' -48.4 NC_003409.1 + 31097 0.69 0.989733
Target:  5'- cAGAGCaUCCaACaacaggCACCGGAGACCa -3'
miRNA:   3'- -UCUUG-AGGcUGacaa--GUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 32115 0.66 0.999
Target:  5'- gGGGGCUCUGGCcacgugggaggUGUcCGCCAGccuggauGCCa -3'
miRNA:   3'- -UCUUGAGGCUG-----------ACAaGUGGUCuu-----UGG- -5'
13310 5' -48.4 NC_003409.1 + 39585 0.66 0.999341
Target:  5'- aAGAACUCCcgcucGugUGUUUuCgCAGggGCa -3'
miRNA:   3'- -UCUUGAGG-----CugACAAGuG-GUCuuUGg -5'
13310 5' -48.4 NC_003409.1 + 49693 0.67 0.996947
Target:  5'- uGAACUCCGcaccCUGagCGCCAGccAGACg -3'
miRNA:   3'- uCUUGAGGCu---GACaaGUGGUC--UUUGg -5'
13310 5' -48.4 NC_003409.1 + 50028 0.71 0.973221
Target:  5'- gAGuACUCaGACUcc-CACCAGAAGCCu -3'
miRNA:   3'- -UCuUGAGgCUGAcaaGUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 51746 0.69 0.988125
Target:  5'- cGGAgUCCGACcGUUgacgggguaucgcCGCCAGAGggcGCCg -3'
miRNA:   3'- uCUUgAGGCUGaCAA-------------GUGGUCUU---UGG- -5'
13310 5' -48.4 NC_003409.1 + 59082 0.7 0.982946
Target:  5'- -cGGCgCCGACg--UCGCCAGAGGCa -3'
miRNA:   3'- ucUUGaGGCUGacaAGUGGUCUUUGg -5'
13310 5' -48.4 NC_003409.1 + 59210 1.14 0.007346
Target:  5'- uAGAACUCCGACUGUUCACCAGAAACCg -3'
miRNA:   3'- -UCUUGAGGCUGACAAGUGGUCUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.