miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13310 5' -48.4 NC_003409.1 + 64347 0.72 0.937921
Target:  5'- gAGua-UCCGGCcuaugGUuuuuUCACCAGAGGCCa -3'
miRNA:   3'- -UCuugAGGCUGa----CA----AGUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 68096 0.67 0.997431
Target:  5'- uGGGC-CCGuCUG---GCCAGAGGCCu -3'
miRNA:   3'- uCUUGaGGCuGACaagUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 32115 0.66 0.999
Target:  5'- gGGGGCUCUGGCcacgugggaggUGUcCGCCAGccuggauGCCa -3'
miRNA:   3'- -UCUUGAGGCUG-----------ACAaGUGGUCuu-----UGG- -5'
13310 5' -48.4 NC_003409.1 + 73936 0.66 0.999341
Target:  5'- aAGAGCuUCCgGGCgg-UCAUgaCGGAGACCa -3'
miRNA:   3'- -UCUUG-AGG-CUGacaAGUG--GUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 59082 0.7 0.982946
Target:  5'- -cGGCgCCGACg--UCGCCAGAGGCa -3'
miRNA:   3'- ucUUGaGGCUGacaAGUGGUCUUUGg -5'
13310 5' -48.4 NC_003409.1 + 51746 0.69 0.988125
Target:  5'- cGGAgUCCGACcGUUgacgggguaucgcCGCCAGAGggcGCCg -3'
miRNA:   3'- uCUUgAGGCUGaCAA-------------GUGGUCUU---UGG- -5'
13310 5' -48.4 NC_003409.1 + 23481 0.69 0.992217
Target:  5'- uAGAACUCCcaaGCUGaUUgGCCcagagcGGGAACCa -3'
miRNA:   3'- -UCUUGAGGc--UGAC-AAgUGG------UCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 18739 0.68 0.995751
Target:  5'- --cGC-CCGACUGggCACCAacauAACCg -3'
miRNA:   3'- ucuUGaGGCUGACaaGUGGUcu--UUGG- -5'
13310 5' -48.4 NC_003409.1 + 24341 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24541 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24421 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24301 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 84993 0.72 0.95194
Target:  5'- -uGACUCCGACcuggaugGUUCAUCgcaAGGAGCCc -3'
miRNA:   3'- ucUUGAGGCUGa------CAAGUGG---UCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24461 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 96421 0.7 0.978488
Target:  5'- ---cUUCCGugUGUccCACCAGggGCg -3'
miRNA:   3'- ucuuGAGGCugACAa-GUGGUCuuUGg -5'
13310 5' -48.4 NC_003409.1 + 24261 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24501 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 103833 0.67 0.998338
Target:  5'- cGAACUCCGuuuugucccacugacGCUGgcaggccuCCGGAAACUg -3'
miRNA:   3'- uCUUGAGGC---------------UGACaagu----GGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 74068 0.7 0.980814
Target:  5'- -aGGCUuuGACcGU--GCCAGAAGCCg -3'
miRNA:   3'- ucUUGAggCUGaCAagUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 86126 0.69 0.989734
Target:  5'- uGGGAUUgCGGCUGUggUUGCCAGguAUCg -3'
miRNA:   3'- -UCUUGAgGCUGACA--AGUGGUCuuUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.