miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13310 5' -48.4 NC_003409.1 + 59210 1.14 0.007346
Target:  5'- uAGAACUCCGACUGUUCACCAGAAACCg -3'
miRNA:   3'- -UCUUGAGGCUGACAAGUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 100536 0.74 0.881614
Target:  5'- ---uCUCCGugUGa--ACCAGAGACCa -3'
miRNA:   3'- ucuuGAGGCugACaagUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 118565 0.73 0.915525
Target:  5'- aGGAAC-CCGGCgcgGcgCAcCCAGGAACCc -3'
miRNA:   3'- -UCUUGaGGCUGa--CaaGU-GGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 64347 0.72 0.937921
Target:  5'- gAGua-UCCGGCcuaugGUuuuuUCACCAGAGGCCa -3'
miRNA:   3'- -UCuugAGGCUGa----CA----AGUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 84993 0.72 0.95194
Target:  5'- -uGACUCCGACcuggaugGUUCAUCgcaAGGAGCCc -3'
miRNA:   3'- ucUUGAGGCUGa------CAAGUGG---UCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 108238 0.72 0.956097
Target:  5'- cGAAgUCCGcccGCUGUagCGCCAGAAguuugGCCu -3'
miRNA:   3'- uCUUgAGGC---UGACAa-GUGGUCUU-----UGG- -5'
13310 5' -48.4 NC_003409.1 + 88031 0.71 0.963661
Target:  5'- aGGGGuCUCCGGCg--UCGCaCAGAcGCCg -3'
miRNA:   3'- -UCUU-GAGGCUGacaAGUG-GUCUuUGG- -5'
13310 5' -48.4 NC_003409.1 + 118611 0.71 0.967079
Target:  5'- aGGAAC-CCGGCgcgGcgCACCccAGGAACCc -3'
miRNA:   3'- -UCUUGaGGCUGa--CaaGUGG--UCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 118520 0.71 0.967079
Target:  5'- aGGAAC-CCGGCgcgGcgCACCccAGGAACCc -3'
miRNA:   3'- -UCUUGaGGCUGa--CaaGUGG--UCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 50028 0.71 0.973221
Target:  5'- gAGuACUCaGACUcc-CACCAGAAGCCu -3'
miRNA:   3'- -UCuUGAGgCUGAcaaGUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 96421 0.7 0.978488
Target:  5'- ---cUUCCGugUGUccCACCAGggGCg -3'
miRNA:   3'- ucuuGAGGCugACAa-GUGGUCuuUGg -5'
13310 5' -48.4 NC_003409.1 + 74068 0.7 0.980814
Target:  5'- -aGGCUuuGACcGU--GCCAGAAGCCg -3'
miRNA:   3'- ucUUGAggCUGaCAagUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 59082 0.7 0.982946
Target:  5'- -cGGCgCCGACg--UCGCCAGAGGCa -3'
miRNA:   3'- ucUUGaGGCUGacaAGUGGUCUUUGg -5'
13310 5' -48.4 NC_003409.1 + 51746 0.69 0.988125
Target:  5'- cGGAgUCCGACcGUUgacgggguaucgcCGCCAGAGggcGCCg -3'
miRNA:   3'- uCUUgAGGCUGaCAA-------------GUGGUCUU---UGG- -5'
13310 5' -48.4 NC_003409.1 + 31097 0.69 0.989733
Target:  5'- cAGAGCaUCCaACaacaggCACCGGAGACCa -3'
miRNA:   3'- -UCUUG-AGGcUGacaa--GUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 86126 0.69 0.989734
Target:  5'- uGGGAUUgCGGCUGUggUUGCCAGguAUCg -3'
miRNA:   3'- -UCUUGAgGCUGACA--AGUGGUCuuUGG- -5'
13310 5' -48.4 NC_003409.1 + 119529 0.69 0.992217
Target:  5'- uAGAACUCCcaaGCUGaUUgGCCcagagcGGGAACCa -3'
miRNA:   3'- -UCUUGAGGc--UGAC-AAgUGG------UCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 115738 0.69 0.992217
Target:  5'- aGGAGCUCUGAgCUcGUggACCAGAuAUCu -3'
miRNA:   3'- -UCUUGAGGCU-GA-CAagUGGUCUuUGG- -5'
13310 5' -48.4 NC_003409.1 + 23481 0.69 0.992217
Target:  5'- uAGAACUCCcaaGCUGaUUgGCCcagagcGGGAACCa -3'
miRNA:   3'- -UCUUGAGGc--UGAC-AAgUGG------UCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 25963 0.69 0.992217
Target:  5'- aAGAACg-UGACgGUUCAuCCGGAGACg -3'
miRNA:   3'- -UCUUGagGCUGaCAAGU-GGUCUUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.