miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13311 3' -53.5 NC_003409.1 + 63838 1.13 0.002163
Target:  5'- gAGACACAGCUGUCACACCAACAGCCCg -3'
miRNA:   3'- -UCUGUGUCGACAGUGUGGUUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 107881 0.77 0.439836
Target:  5'- cGGC-CAGCgcUCGCACCAgcgGCAGCCCu -3'
miRNA:   3'- uCUGuGUCGacAGUGUGGU---UGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 100065 0.75 0.534799
Target:  5'- cGGgGCGGCUGUgGCACCAaauuauggaggcuaGguGCCCa -3'
miRNA:   3'- uCUgUGUCGACAgUGUGGU--------------UguCGGG- -5'
13311 3' -53.5 NC_003409.1 + 53476 0.75 0.537863
Target:  5'- uGGACACAGUcugggugGUCGCACCugguaagcagGGCGGCCa -3'
miRNA:   3'- -UCUGUGUCGa------CAGUGUGG----------UUGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 73723 0.74 0.58969
Target:  5'- cGGCACcGUUGUCGCAgUAaucACGGCCCc -3'
miRNA:   3'- uCUGUGuCGACAGUGUgGU---UGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 40536 0.74 0.6107
Target:  5'- uGGACGCGGCcguucgGUgGCGCCAguGCAGgCCu -3'
miRNA:   3'- -UCUGUGUCGa-----CAgUGUGGU--UGUCgGG- -5'
13311 3' -53.5 NC_003409.1 + 33445 0.73 0.663374
Target:  5'- gGGACACGGUcGaUCGCGCCucgagGGCGGCCa -3'
miRNA:   3'- -UCUGUGUCGaC-AGUGUGG-----UUGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 41870 0.72 0.715368
Target:  5'- gGGACACgAGCUGguuuagaGCCAGCugaaAGCCCa -3'
miRNA:   3'- -UCUGUG-UCGACagug---UGGUUG----UCGGG- -5'
13311 3' -53.5 NC_003409.1 + 19288 0.71 0.725581
Target:  5'- cGuCGCAGCgg-CAagGCCAGCGGCCCc -3'
miRNA:   3'- uCuGUGUCGacaGUg-UGGUUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 59403 0.71 0.735708
Target:  5'- uGACACgagcacguaaaAGCUGUU--GCCAACGGCCa -3'
miRNA:   3'- uCUGUG-----------UCGACAGugUGGUUGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 32677 0.71 0.765475
Target:  5'- gAGAUGCuGCUGUgugaggCAUACCGggACAGCCUc -3'
miRNA:   3'- -UCUGUGuCGACA------GUGUGGU--UGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 92369 0.71 0.765475
Target:  5'- gGGGCACaAGCuUGUCAC-CCAcuuuguaaAUAGCCUg -3'
miRNA:   3'- -UCUGUG-UCG-ACAGUGuGGU--------UGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 95582 0.71 0.773233
Target:  5'- cAGAgGCAGCguccucagaggcGUC-CuCCAGCGGCCCa -3'
miRNA:   3'- -UCUgUGUCGa-----------CAGuGuGGUUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 15160 0.71 0.775159
Target:  5'- uGGAuCGCAGCUGUCcaguUACCAGCGuCUCg -3'
miRNA:   3'- -UCU-GUGUCGACAGu---GUGGUUGUcGGG- -5'
13311 3' -53.5 NC_003409.1 + 109742 0.7 0.812441
Target:  5'- ---gGCAGCUGUgGucCACCuuGCGGCCCc -3'
miRNA:   3'- ucugUGUCGACAgU--GUGGu-UGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 119431 0.69 0.830077
Target:  5'- -aGCGCAGCUGaguCAUCG-CAGCCCc -3'
miRNA:   3'- ucUGUGUCGACaguGUGGUuGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 31826 0.69 0.830077
Target:  5'- cGGCAUccaAGCcGUCACACCAcccagacCAGCCa -3'
miRNA:   3'- uCUGUG---UCGaCAGUGUGGUu------GUCGGg -5'
13311 3' -53.5 NC_003409.1 + 23579 0.69 0.830078
Target:  5'- -aGCGCAGCUGaguCAUCG-CAGCCCc -3'
miRNA:   3'- ucUGUGUCGACaguGUGGUuGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 95732 0.69 0.855079
Target:  5'- aGGACGCuGCcucUGUC--ACCAGCuGCCCc -3'
miRNA:   3'- -UCUGUGuCG---ACAGugUGGUUGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 101376 0.69 0.862995
Target:  5'- ---uGCuGCUGUUuaagagggcagGCACCGGCAGUCCu -3'
miRNA:   3'- ucugUGuCGACAG-----------UGUGGUUGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.