miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13311 3' -53.5 NC_003409.1 + 4585 0.66 0.952902
Target:  5'- gGGGCAaugucCAGCUGUaUGCAUCAACAcGCUg -3'
miRNA:   3'- -UCUGU-----GUCGACA-GUGUGGUUGU-CGGg -5'
13311 3' -53.5 NC_003409.1 + 10041 0.66 0.948655
Target:  5'- cGGACAUgGGCUGcCAgACCAAauagAGUCCg -3'
miRNA:   3'- -UCUGUG-UCGACaGUgUGGUUg---UCGGG- -5'
13311 3' -53.5 NC_003409.1 + 15160 0.71 0.775159
Target:  5'- uGGAuCGCAGCUGUCcaguUACCAGCGuCUCg -3'
miRNA:   3'- -UCU-GUGUCGACAGu---GUGGUUGUcGGG- -5'
13311 3' -53.5 NC_003409.1 + 19288 0.71 0.725581
Target:  5'- cGuCGCAGCgg-CAagGCCAGCGGCCCc -3'
miRNA:   3'- uCuGUGUCGacaGUg-UGGUUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 20372 0.66 0.944161
Target:  5'- uGAUACAGCUGaCAggaaagcuCACCGuCAGCUa -3'
miRNA:   3'- uCUGUGUCGACaGU--------GUGGUuGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 22435 0.67 0.934423
Target:  5'- -cACAUAGCUcaaUCACgGCCAcccagaagaGCAGCCCc -3'
miRNA:   3'- ucUGUGUCGAc--AGUG-UGGU---------UGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 22586 0.66 0.952902
Target:  5'- uGAUugAGCUaugUGCgGCCAGCGGUCCu -3'
miRNA:   3'- uCUGugUCGAca-GUG-UGGUUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 23579 0.69 0.830078
Target:  5'- -aGCGCAGCUGaguCAUCG-CAGCCCc -3'
miRNA:   3'- ucUGUGUCGACaguGUGGUuGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 23752 0.68 0.892388
Target:  5'- aAGGCAaccuCAGCUGggaAUACCAGCGGacuaccCCCa -3'
miRNA:   3'- -UCUGU----GUCGACag-UGUGGUUGUC------GGG- -5'
13311 3' -53.5 NC_003409.1 + 26110 0.69 0.862995
Target:  5'- gGGugACcguaCUGcCAUACCGACGGCCg -3'
miRNA:   3'- -UCugUGuc--GACaGUGUGGUUGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 26145 0.66 0.948655
Target:  5'- -uGCACAaCgc-CACGCCGACaAGCCCa -3'
miRNA:   3'- ucUGUGUcGacaGUGUGGUUG-UCGGG- -5'
13311 3' -53.5 NC_003409.1 + 31826 0.69 0.830077
Target:  5'- cGGCAUccaAGCcGUCACACCAcccagacCAGCCa -3'
miRNA:   3'- uCUGUG---UCGaCAGUGUGGUu------GUCGGg -5'
13311 3' -53.5 NC_003409.1 + 32677 0.71 0.765475
Target:  5'- gAGAUGCuGCUGUgugaggCAUACCGggACAGCCUc -3'
miRNA:   3'- -UCUGUGuCGACA------GUGUGGU--UGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 33445 0.73 0.663374
Target:  5'- gGGACACGGUcGaUCGCGCCucgagGGCGGCCa -3'
miRNA:   3'- -UCUGUGUCGaC-AGUGUGG-----UUGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 36020 0.67 0.934423
Target:  5'- cGGCgACuGCUGUCcccguCACCAcGCAGCUUa -3'
miRNA:   3'- uCUG-UGuCGACAGu----GUGGU-UGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 40536 0.74 0.6107
Target:  5'- uGGACGCGGCcguucgGUgGCGCCAguGCAGgCCu -3'
miRNA:   3'- -UCUGUGUCGa-----CAgUGUGGU--UGUCgGG- -5'
13311 3' -53.5 NC_003409.1 + 41870 0.72 0.715368
Target:  5'- gGGACACgAGCUGguuuagaGCCAGCugaaAGCCCa -3'
miRNA:   3'- -UCUGUG-UCGACagug---UGGUUG----UCGGG- -5'
13311 3' -53.5 NC_003409.1 + 49201 0.68 0.892388
Target:  5'- uGGGCAUAGCU---AC-CCAGgAGCCCu -3'
miRNA:   3'- -UCUGUGUCGAcagUGuGGUUgUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 49877 0.66 0.939418
Target:  5'- -aACGCGGCgGUCgaagGCAaCAGCAGCCa -3'
miRNA:   3'- ucUGUGUCGaCAG----UGUgGUUGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 50170 0.67 0.934423
Target:  5'- uGACACAGUuugacaugUGUCggguagACACC-ACcGCCCa -3'
miRNA:   3'- uCUGUGUCG--------ACAG------UGUGGuUGuCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.