miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13311 3' -53.5 NC_003409.1 + 133634 0.68 0.895118
Target:  5'- cAGACACAGggggcccucaccggcCUGUaugcCACCGAacCGGCCCu -3'
miRNA:   3'- -UCUGUGUC---------------GACAgu--GUGGUU--GUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 133008 0.66 0.952902
Target:  5'- gAGACaaACAGCUccaggccgGUCcgcgGCGCCAGC-GCCUg -3'
miRNA:   3'- -UCUG--UGUCGA--------CAG----UGUGGUUGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 131284 0.67 0.917918
Target:  5'- cAGGCGCAGCUGacucccaaggCACaugGCCcuuaGGCuGCCCa -3'
miRNA:   3'- -UCUGUGUCGACa---------GUG---UGG----UUGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 131222 0.67 0.917918
Target:  5'- gGGGCACuGCUcccaGgcaGCACCAacGCGGCCa -3'
miRNA:   3'- -UCUGUGuCGA----Cag-UGUGGU--UGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 128331 0.66 0.948655
Target:  5'- uGGCcgGCAGgUGUCAUGC--ACAGCCUg -3'
miRNA:   3'- uCUG--UGUCgACAGUGUGguUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 119961 0.68 0.878156
Target:  5'- -cGCGCGGCgccCACGCCGGC-GCCUg -3'
miRNA:   3'- ucUGUGUCGacaGUGUGGUUGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 119431 0.69 0.830077
Target:  5'- -aGCGCAGCUGaguCAUCG-CAGCCCc -3'
miRNA:   3'- ucUGUGUCGACaguGUGGUuGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 119228 0.68 0.892387
Target:  5'- aAGGCAaccuCAGCUGggaAUACCAGCGGacuaccCCCa -3'
miRNA:   3'- -UCUGU----GUCGACag-UGUGGUUGUC------GGG- -5'
13311 3' -53.5 NC_003409.1 + 114583 0.68 0.885391
Target:  5'- uGACuGCGGgUGUCGCGCUuuGGgGGCCUg -3'
miRNA:   3'- uCUG-UGUCgACAGUGUGG--UUgUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 113109 0.66 0.952902
Target:  5'- aGGGCACcuccAGgaGgggacgaCGCGgCAACGGCCCa -3'
miRNA:   3'- -UCUGUG----UCgaCa------GUGUgGUUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 110681 0.67 0.928637
Target:  5'- cGGACAgCAGCcgaagauUGUCGCGgaCAACAuGCCUa -3'
miRNA:   3'- -UCUGU-GUCG-------ACAGUGUg-GUUGU-CGGG- -5'
13311 3' -53.5 NC_003409.1 + 109856 0.67 0.917918
Target:  5'- aAGugACGGCc--CACACCAagACGGCUa -3'
miRNA:   3'- -UCugUGUCGacaGUGUGGU--UGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 109742 0.7 0.812441
Target:  5'- ---gGCAGCUGUgGucCACCuuGCGGCCCc -3'
miRNA:   3'- ucugUGUCGACAgU--GUGGu-UGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 109463 0.67 0.91191
Target:  5'- cGGAgGCGGCgcacgcaugucuUGUCACgcuGCCAACAauGCUCa -3'
miRNA:   3'- -UCUgUGUCG------------ACAGUG---UGGUUGU--CGGG- -5'
13311 3' -53.5 NC_003409.1 + 109289 0.67 0.911295
Target:  5'- uGACGCaccuugucuaccuAGCUGggCGCGCCGucuugGGCCCa -3'
miRNA:   3'- uCUGUG-------------UCGACa-GUGUGGUug---UCGGG- -5'
13311 3' -53.5 NC_003409.1 + 107881 0.77 0.439836
Target:  5'- cGGC-CAGCgcUCGCACCAgcgGCAGCCCu -3'
miRNA:   3'- uCUGuGUCGacAGUGUGGU---UGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 106236 0.66 0.956906
Target:  5'- uGcCACuGCUGagcaUCACcuuACCAACGuGCCCa -3'
miRNA:   3'- uCuGUGuCGAC----AGUG---UGGUUGU-CGGG- -5'
13311 3' -53.5 NC_003409.1 + 105283 0.66 0.956906
Target:  5'- cGACauaACGGCggacGUCACACCcGACAacaCCCa -3'
miRNA:   3'- uCUG---UGUCGa---CAGUGUGG-UUGUc--GGG- -5'
13311 3' -53.5 NC_003409.1 + 104863 0.67 0.920251
Target:  5'- aGGACGCGGUgg-C-CACCAGCcaccagacgagcaccAGCCCc -3'
miRNA:   3'- -UCUGUGUCGacaGuGUGGUUG---------------UCGGG- -5'
13311 3' -53.5 NC_003409.1 + 103286 0.66 0.956906
Target:  5'- cGACACAGCuUGUCu--CCAAgguUGGCCa -3'
miRNA:   3'- uCUGUGUCG-ACAGuguGGUU---GUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.