miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13311 3' -53.5 NC_003409.1 + 50664 0.67 0.934423
Target:  5'- uGGuCGCGGggGUCaggGCACuCGACGGCCUc -3'
miRNA:   3'- -UCuGUGUCgaCAG---UGUG-GUUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 51425 0.66 0.943698
Target:  5'- aGGACcuuuCuGCUGcaUCACGCCAuaccccuGgAGCCCg -3'
miRNA:   3'- -UCUGu---GuCGAC--AGUGUGGU-------UgUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 53374 0.66 0.952902
Target:  5'- aAGA-ACAGCaGcCACACCGAUccGCCCc -3'
miRNA:   3'- -UCUgUGUCGaCaGUGUGGUUGu-CGGG- -5'
13311 3' -53.5 NC_003409.1 + 53476 0.75 0.537863
Target:  5'- uGGACACAGUcugggugGUCGCACCugguaagcagGGCGGCCa -3'
miRNA:   3'- -UCUGUGUCGa------CAGUGUGG----------UUGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 59403 0.71 0.735708
Target:  5'- uGACACgagcacguaaaAGCUGUU--GCCAACGGCCa -3'
miRNA:   3'- uCUGUG-----------UCGACAGugUGGUUGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 60859 0.66 0.956517
Target:  5'- uAGAUAgAGCUGUgCcacguuccgguggACGCCGcgGGCCCg -3'
miRNA:   3'- -UCUGUgUCGACA-G-------------UGUGGUugUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 61061 0.67 0.91191
Target:  5'- aGGGCACAGCcuUUGCGCCAuuACuuCCCg -3'
miRNA:   3'- -UCUGUGUCGacAGUGUGGU--UGucGGG- -5'
13311 3' -53.5 NC_003409.1 + 62272 0.66 0.939418
Target:  5'- cAGACucugaaAGCUGUC-CGgCAAguUAGCCCa -3'
miRNA:   3'- -UCUGug----UCGACAGuGUgGUU--GUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 63838 1.13 0.002163
Target:  5'- gAGACACAGCUGUCACACCAACAGCCCg -3'
miRNA:   3'- -UCUGUGUCGACAGUGUGGUUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 70541 0.69 0.863774
Target:  5'- gGGGCGCGGCagcugacucaaaaagGUCACugCcuCuGCCCa -3'
miRNA:   3'- -UCUGUGUCGa--------------CAGUGugGuuGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 71962 0.68 0.878156
Target:  5'- ---gACAGCUGUCGuucagaugUACCAGCGGUgCa -3'
miRNA:   3'- ucugUGUCGACAGU--------GUGGUUGUCGgG- -5'
13311 3' -53.5 NC_003409.1 + 73723 0.74 0.58969
Target:  5'- cGGCACcGUUGUCGCAgUAaucACGGCCCc -3'
miRNA:   3'- uCUGUGuCGACAGUGUgGU---UGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 80449 0.67 0.91191
Target:  5'- aGGACACGGCcagccUGUUggcCACCAuUAGCCa -3'
miRNA:   3'- -UCUGUGUCG-----ACAGu--GUGGUuGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 81314 0.66 0.952902
Target:  5'- aAGAUACuAGuCUGUCACcccgcccCCAACGGCa- -3'
miRNA:   3'- -UCUGUG-UC-GACAGUGu------GGUUGUCGgg -5'
13311 3' -53.5 NC_003409.1 + 85319 0.66 0.939418
Target:  5'- cGGCAUAGCUGUgCuuACCAcuggacauuGCGGCgCg -3'
miRNA:   3'- uCUGUGUCGACA-GugUGGU---------UGUCGgG- -5'
13311 3' -53.5 NC_003409.1 + 88473 0.67 0.934423
Target:  5'- ---aACGGCguUCGCACCAACuGCCa -3'
miRNA:   3'- ucugUGUCGacAGUGUGGUUGuCGGg -5'
13311 3' -53.5 NC_003409.1 + 92369 0.71 0.765475
Target:  5'- gGGGCACaAGCuUGUCAC-CCAcuuuguaaAUAGCCUg -3'
miRNA:   3'- -UCUGUG-UCG-ACAGUGuGGU--------UGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 95582 0.71 0.773233
Target:  5'- cAGAgGCAGCguccucagaggcGUC-CuCCAGCGGCCCa -3'
miRNA:   3'- -UCUgUGUCGa-----------CAGuGuGGUUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 95732 0.69 0.855079
Target:  5'- aGGACGCuGCcucUGUC--ACCAGCuGCCCc -3'
miRNA:   3'- -UCUGUGuCG---ACAGugUGGUUGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 96074 0.68 0.899142
Target:  5'- uGGGCGUGGUg--CACACCGAC-GCCCu -3'
miRNA:   3'- -UCUGUGUCGacaGUGUGGUUGuCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.