miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13311 3' -53.5 NC_003409.1 + 88473 0.67 0.934423
Target:  5'- ---aACGGCguUCGCACCAACuGCCa -3'
miRNA:   3'- ucugUGUCGacAGUGUGGUUGuCGGg -5'
13311 3' -53.5 NC_003409.1 + 50170 0.67 0.934423
Target:  5'- uGACACAGUuugacaugUGUCggguagACACC-ACcGCCCa -3'
miRNA:   3'- uCUGUGUCG--------ACAG------UGUGGuUGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 50664 0.67 0.934423
Target:  5'- uGGuCGCGGggGUCaggGCACuCGACGGCCUc -3'
miRNA:   3'- -UCuGUGUCgaCAG---UGUG-GUUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 102991 0.67 0.929175
Target:  5'- -cGCACAGUguccgCACGCCuuucuACAGUCCc -3'
miRNA:   3'- ucUGUGUCGaca--GUGUGGu----UGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 110681 0.67 0.928637
Target:  5'- cGGACAgCAGCcgaagauUGUCGCGgaCAACAuGCCUa -3'
miRNA:   3'- -UCUGU-GUCG-------ACAGUGUg-GUUGU-CGGG- -5'
13311 3' -53.5 NC_003409.1 + 104863 0.67 0.920251
Target:  5'- aGGACGCGGUgg-C-CACCAGCcaccagacgagcaccAGCCCc -3'
miRNA:   3'- -UCUGUGUCGacaGuGUGGUUG---------------UCGGG- -5'
13311 3' -53.5 NC_003409.1 + 131222 0.67 0.917918
Target:  5'- gGGGCACuGCUcccaGgcaGCACCAacGCGGCCa -3'
miRNA:   3'- -UCUGUGuCGA----Cag-UGUGGU--UGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 109856 0.67 0.917918
Target:  5'- aAGugACGGCc--CACACCAagACGGCUa -3'
miRNA:   3'- -UCugUGUCGacaGUGUGGU--UGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 131284 0.67 0.917918
Target:  5'- cAGGCGCAGCUGacucccaaggCACaugGCCcuuaGGCuGCCCa -3'
miRNA:   3'- -UCUGUGUCGACa---------GUG---UGG----UUGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 61061 0.67 0.91191
Target:  5'- aGGGCACAGCcuUUGCGCCAuuACuuCCCg -3'
miRNA:   3'- -UCUGUGUCGacAGUGUGGU--UGucGGG- -5'
13311 3' -53.5 NC_003409.1 + 80449 0.67 0.91191
Target:  5'- aGGACACGGCcagccUGUUggcCACCAuUAGCCa -3'
miRNA:   3'- -UCUGUGUCG-----ACAGu--GUGGUuGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 109463 0.67 0.91191
Target:  5'- cGGAgGCGGCgcacgcaugucuUGUCACgcuGCCAACAauGCUCa -3'
miRNA:   3'- -UCUgUGUCG------------ACAGUG---UGGUUGU--CGGG- -5'
13311 3' -53.5 NC_003409.1 + 99602 0.67 0.91191
Target:  5'- cGGACAacucgcCAGCUGUUuauUCuGCAGCCCu -3'
miRNA:   3'- -UCUGU------GUCGACAGuguGGuUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 109289 0.67 0.911295
Target:  5'- uGACGCaccuugucuaccuAGCUGggCGCGCCGucuugGGCCCa -3'
miRNA:   3'- uCUGUG-------------UCGACa-GUGUGGUug---UCGGG- -5'
13311 3' -53.5 NC_003409.1 + 96074 0.68 0.899142
Target:  5'- uGGGCGUGGUg--CACACCGAC-GCCCu -3'
miRNA:   3'- -UCUGUGUCGacaGUGUGGUUGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 133634 0.68 0.895118
Target:  5'- cAGACACAGggggcccucaccggcCUGUaugcCACCGAacCGGCCCu -3'
miRNA:   3'- -UCUGUGUC---------------GACAgu--GUGGUU--GUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 23752 0.68 0.892388
Target:  5'- aAGGCAaccuCAGCUGggaAUACCAGCGGacuaccCCCa -3'
miRNA:   3'- -UCUGU----GUCGACag-UGUGGUUGUC------GGG- -5'
13311 3' -53.5 NC_003409.1 + 49201 0.68 0.892388
Target:  5'- uGGGCAUAGCU---AC-CCAGgAGCCCu -3'
miRNA:   3'- -UCUGUGUCGAcagUGuGGUUgUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 119228 0.68 0.892387
Target:  5'- aAGGCAaccuCAGCUGggaAUACCAGCGGacuaccCCCa -3'
miRNA:   3'- -UCUGU----GUCGACag-UGUGGUUGUC------GGG- -5'
13311 3' -53.5 NC_003409.1 + 97262 0.68 0.885391
Target:  5'- gGGACG-AGCUGcugCACACCAA-GGCCg -3'
miRNA:   3'- -UCUGUgUCGACa--GUGUGGUUgUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.