miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13313 3' -57.5 NC_003409.1 + 12835 0.66 0.843701
Target:  5'- aGCUUUUCCCUGCaaaCCUgGUAcaugucuauggggacGaUCCCCGa -3'
miRNA:   3'- -CGAAAAGGGGCGa--GGA-CGU---------------C-AGGGGC- -5'
13313 3' -57.5 NC_003409.1 + 124068 0.67 0.797728
Target:  5'- gGCagg-CCCCGUgUCCUGCuugCCCCa -3'
miRNA:   3'- -CGaaaaGGGGCG-AGGACGucaGGGGc -5'
13313 3' -57.5 NC_003409.1 + 129935 0.67 0.797728
Target:  5'- -----aCCCUGCUCCUGUgucgacAGgcaucCCCCGa -3'
miRNA:   3'- cgaaaaGGGGCGAGGACG------UCa----GGGGC- -5'
13313 3' -57.5 NC_003409.1 + 119691 0.67 0.788702
Target:  5'- uCUg--CCCCGCUCCcauUGGUCCgCCGg -3'
miRNA:   3'- cGAaaaGGGGCGAGGac-GUCAGG-GGC- -5'
13313 3' -57.5 NC_003409.1 + 23318 0.67 0.788701
Target:  5'- uCUg--CCCCGCUCCcauUGGUCCgCCGg -3'
miRNA:   3'- cGAaaaGGGGCGAGGac-GUCAGG-GGC- -5'
13313 3' -57.5 NC_003409.1 + 26264 0.67 0.779535
Target:  5'- ----aUCCuaaCUGCUCCUGCGGgaacauucucCCCCGg -3'
miRNA:   3'- cgaaaAGG---GGCGAGGACGUCa---------GGGGC- -5'
13313 3' -57.5 NC_003409.1 + 124379 0.67 0.779535
Target:  5'- ----gUCuCCUGCUCCUGCuGUUCCa- -3'
miRNA:   3'- cgaaaAG-GGGCGAGGACGuCAGGGgc -5'
13313 3' -57.5 NC_003409.1 + 74353 0.68 0.751286
Target:  5'- aGCUggacacgCCaCCGCcUCUGCGGUCaCCCu -3'
miRNA:   3'- -CGAaaa----GG-GGCGaGGACGUCAG-GGGc -5'
13313 3' -57.5 NC_003409.1 + 66608 0.68 0.74165
Target:  5'- uCUgugUCCCC-CUCCUGCcccagaacGUCCUCGg -3'
miRNA:   3'- cGAaa-AGGGGcGAGGACGu-------CAGGGGC- -5'
13313 3' -57.5 NC_003409.1 + 32944 0.71 0.540569
Target:  5'- aGCUUUUCaUuuGCUaCCUGaUAGUCUCCGg -3'
miRNA:   3'- -CGAAAAG-GggCGA-GGAC-GUCAGGGGC- -5'
13313 3' -57.5 NC_003409.1 + 61103 0.72 0.473068
Target:  5'- gGCUg--CCCCGUUCCacuUGCuGUCCUCa -3'
miRNA:   3'- -CGAaaaGGGGCGAGG---ACGuCAGGGGc -5'
13313 3' -57.5 NC_003409.1 + 118662 0.74 0.376503
Target:  5'- -----aCCCUGCgaacCCUGCAGUaCCCCGg -3'
miRNA:   3'- cgaaaaGGGGCGa---GGACGUCA-GGGGC- -5'
13313 3' -57.5 NC_003409.1 + 65204 1.1 0.001659
Target:  5'- uGCUUUUCCCCGCUCCUGCAGUCCCCGu -3'
miRNA:   3'- -CGAAAAGGGGCGAGGACGUCAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.