Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13313 | 5' | -52.8 | NC_003409.1 | + | 65167 | 1.13 | 0.002853 |
Target: 5'- uGCCGAAAACGGCAGAAAGGGGCCUUCg -3' miRNA: 3'- -CGGCUUUUGCCGUCUUUCCCCGGAAG- -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 66437 | 0.75 | 0.549464 |
Target: 5'- uCCGAGGACguucuggGGCAGGAGGGGgacacagauGCCUUCu -3' miRNA: 3'- cGGCUUUUG-------CCGUCUUUCCC---------CGGAAG- -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 25946 | 0.72 | 0.718208 |
Target: 5'- uCCGGAGACGaGcCGGAcGGGGGCCc-- -3' miRNA: 3'- cGGCUUUUGC-C-GUCUuUCCCCGGaag -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 80550 | 0.71 | 0.787522 |
Target: 5'- uCCGAuGACGGuCAGuuuAAAGaGGGCCUUUu -3' miRNA: 3'- cGGCUuUUGCC-GUC---UUUC-CCCGGAAG- -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 113219 | 0.71 | 0.796907 |
Target: 5'- aCCGAAGACGGUaacgggcucgGGAuAGGGGCg--- -3' miRNA: 3'- cGGCUUUUGCCG----------UCUuUCCCCGgaag -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 92023 | 0.71 | 0.806133 |
Target: 5'- uGuuGGAucucguGGCGGUGGGAcAGGGGCCUa- -3' miRNA: 3'- -CggCUU------UUGCCGUCUU-UCCCCGGAag -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 116758 | 0.71 | 0.81519 |
Target: 5'- gGCCGGGugcGACGGUAGAcaggucuAGGGGCag-Ca -3' miRNA: 3'- -CGGCUU---UUGCCGUCUu------UCCCCGgaaG- -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 63582 | 0.7 | 0.841263 |
Target: 5'- -aCGuuAGCuGCAGAGAGGGGuCCUg- -3' miRNA: 3'- cgGCuuUUGcCGUCUUUCCCC-GGAag -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 82918 | 0.69 | 0.865512 |
Target: 5'- cGCCGGAGGCcuGCAaacgcuuGGGGCUUUCg -3' miRNA: 3'- -CGGCUUUUGc-CGUcuuu---CCCCGGAAG- -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 42697 | 0.69 | 0.894681 |
Target: 5'- cGCuCGG---UGGCAGuaguAGGGGGCCcUCg -3' miRNA: 3'- -CG-GCUuuuGCCGUCu---UUCCCCGGaAG- -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 3009 | 0.68 | 0.907816 |
Target: 5'- --gGAAAGCGaCAGAAGGGGGCg--- -3' miRNA: 3'- cggCUUUUGCcGUCUUUCCCCGgaag -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 88687 | 0.68 | 0.914007 |
Target: 5'- uGCCGGca--GGCAGGGgcgcGGGGGCUg-- -3' miRNA: 3'- -CGGCUuuugCCGUCUU----UCCCCGGaag -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 47900 | 0.68 | 0.919945 |
Target: 5'- uGCCGAGuaggcauacACGuGCAGucuGGGGCCa-- -3' miRNA: 3'- -CGGCUUu--------UGC-CGUCuuuCCCCGGaag -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 118870 | 0.68 | 0.919945 |
Target: 5'- gGCUGGAGugGCGGUGGGc-GGGGCCc-- -3' miRNA: 3'- -CGGCUUU--UGCCGUCUuuCCCCGGaag -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 84010 | 0.68 | 0.919945 |
Target: 5'- cGUCGGuuuucccuGgGGCAGcaaGAGGGGGCCggagUCa -3' miRNA: 3'- -CGGCUuu------UgCCGUC---UUUCCCCGGa---AG- -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 94331 | 0.68 | 0.925629 |
Target: 5'- cCCGAcAAcCGGCuGggGGGGGCg--- -3' miRNA: 3'- cGGCUuUU-GCCGuCuuUCCCCGgaag -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 36573 | 0.67 | 0.935724 |
Target: 5'- cGCCGAGucguuGCGGCGGGucagggcGAGGGGa---- -3' miRNA: 3'- -CGGCUUu----UGCCGUCU-------UUCCCCggaag -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 24015 | 0.67 | 0.93623 |
Target: 5'- uCUGGGugguuuCGGUAGAuGGGGGCCg-- -3' miRNA: 3'- cGGCUUuu----GCCGUCUuUCCCCGGaag -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 101143 | 0.67 | 0.93623 |
Target: 5'- gGCCuGAGugGG-GGAGGcGGGaGCCUUCa -3' miRNA: 3'- -CGGcUUUugCCgUCUUU-CCC-CGGAAG- -5' |
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13313 | 5' | -52.8 | NC_003409.1 | + | 107697 | 0.67 | 0.941149 |
Target: 5'- cGCUGGAcccACGGCcgccGGAAGGGGCg--- -3' miRNA: 3'- -CGGCUUu--UGCCGu---CUUUCCCCGgaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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