miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13313 5' -52.8 NC_003409.1 + 3009 0.68 0.907816
Target:  5'- --gGAAAGCGaCAGAAGGGGGCg--- -3'
miRNA:   3'- cggCUUUUGCcGUCUUUCCCCGgaag -5'
13313 5' -52.8 NC_003409.1 + 6403 0.66 0.971709
Target:  5'- uGCCauGGACGGCcGAGGGuGuGGCCUcggUCa -3'
miRNA:   3'- -CGGcuUUUGCCGuCUUUC-C-CCGGA---AG- -5'
13313 5' -52.8 NC_003409.1 + 20795 0.67 0.950232
Target:  5'- gGCCGGGcGCGGCcuggcgcacagaAGGGAGGGGgaUUUg -3'
miRNA:   3'- -CGGCUUuUGCCG------------UCUUUCCCCggAAG- -5'
13313 5' -52.8 NC_003409.1 + 24015 0.67 0.93623
Target:  5'- uCUGGGugguuuCGGUAGAuGGGGGCCg-- -3'
miRNA:   3'- cGGCUUuu----GCCGUCUuUCCCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 25946 0.72 0.718208
Target:  5'- uCCGGAGACGaGcCGGAcGGGGGCCc-- -3'
miRNA:   3'- cGGCUUUUGC-C-GUCUuUCCCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 31667 0.66 0.968702
Target:  5'- gGCCu-AAugGGguGu-GGGGGCCa-- -3'
miRNA:   3'- -CGGcuUUugCCguCuuUCCCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 33741 0.66 0.961659
Target:  5'- aCCGGAuccaAACGcccccauGCuGAAAGGGGCCa-- -3'
miRNA:   3'- cGGCUU----UUGC-------CGuCUUUCCCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 34905 0.66 0.971418
Target:  5'- aCCGAAGAUggacagaGGCGGGAAGauucuGGGCCc-- -3'
miRNA:   3'- cGGCUUUUG-------CCGUCUUUC-----CCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 36573 0.67 0.935724
Target:  5'- cGCCGAGucguuGCGGCGGGucagggcGAGGGGa---- -3'
miRNA:   3'- -CGGCUUu----UGCCGUCU-------UUCCCCggaag -5'
13313 5' -52.8 NC_003409.1 + 42697 0.69 0.894681
Target:  5'- cGCuCGG---UGGCAGuaguAGGGGGCCcUCg -3'
miRNA:   3'- -CG-GCUuuuGCCGUCu---UUCCCCGGaAG- -5'
13313 5' -52.8 NC_003409.1 + 47900 0.68 0.919945
Target:  5'- uGCCGAGuaggcauacACGuGCAGucuGGGGCCa-- -3'
miRNA:   3'- -CGGCUUu--------UGC-CGUCuuuCCCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 63582 0.7 0.841263
Target:  5'- -aCGuuAGCuGCAGAGAGGGGuCCUg- -3'
miRNA:   3'- cgGCuuUUGcCGUCUUUCCCC-GGAag -5'
13313 5' -52.8 NC_003409.1 + 65167 1.13 0.002853
Target:  5'- uGCCGAAAACGGCAGAAAGGGGCCUUCg -3'
miRNA:   3'- -CGGCUUUUGCCGUCUUUCCCCGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 66437 0.75 0.549464
Target:  5'- uCCGAGGACguucuggGGCAGGAGGGGgacacagauGCCUUCu -3'
miRNA:   3'- cGGCUUUUG-------CCGUCUUUCCC---------CGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 72427 0.67 0.954402
Target:  5'- gGuuGA--ACaGguGAucuuuAAGGGGCCUUCu -3'
miRNA:   3'- -CggCUuuUGcCguCU-----UUCCCCGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 76412 0.66 0.958329
Target:  5'- cGCaGAAAACGGCAGAAauAGuGGuGCUa-- -3'
miRNA:   3'- -CGgCUUUUGCCGUCUU--UC-CC-CGGaag -5'
13313 5' -52.8 NC_003409.1 + 80550 0.71 0.787522
Target:  5'- uCCGAuGACGGuCAGuuuAAAGaGGGCCUUUu -3'
miRNA:   3'- cGGCUuUUGCC-GUC---UUUC-CCCGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 82918 0.69 0.865512
Target:  5'- cGCCGGAGGCcuGCAaacgcuuGGGGCUUUCg -3'
miRNA:   3'- -CGGCUUUUGc-CGUcuuu---CCCCGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 84010 0.68 0.919945
Target:  5'- cGUCGGuuuucccuGgGGCAGcaaGAGGGGGCCggagUCa -3'
miRNA:   3'- -CGGCUuu------UgCCGUC---UUUCCCCGGa---AG- -5'
13313 5' -52.8 NC_003409.1 + 84544 0.67 0.945816
Target:  5'- uGCCaucuuguacGACGGCAGAGggucAGGaGGCCgUCa -3'
miRNA:   3'- -CGGcuu------UUGCCGUCUU----UCC-CCGGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.