miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13313 5' -52.8 NC_003409.1 + 84010 0.68 0.919945
Target:  5'- cGUCGGuuuucccuGgGGCAGcaaGAGGGGGCCggagUCa -3'
miRNA:   3'- -CGGCUuu------UgCCGUC---UUUCCCCGGa---AG- -5'
13313 5' -52.8 NC_003409.1 + 47900 0.68 0.919945
Target:  5'- uGCCGAGuaggcauacACGuGCAGucuGGGGCCa-- -3'
miRNA:   3'- -CGGCUUu--------UGC-CGUCuuuCCCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 88687 0.68 0.914007
Target:  5'- uGCCGGca--GGCAGGGgcgcGGGGGCUg-- -3'
miRNA:   3'- -CGGCUuuugCCGUCUU----UCCCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 3009 0.68 0.907816
Target:  5'- --gGAAAGCGaCAGAAGGGGGCg--- -3'
miRNA:   3'- cggCUUUUGCcGUCUUUCCCCGgaag -5'
13313 5' -52.8 NC_003409.1 + 42697 0.69 0.894681
Target:  5'- cGCuCGG---UGGCAGuaguAGGGGGCCcUCg -3'
miRNA:   3'- -CG-GCUuuuGCCGUCu---UUCCCCGGaAG- -5'
13313 5' -52.8 NC_003409.1 + 82918 0.69 0.865512
Target:  5'- cGCCGGAGGCcuGCAaacgcuuGGGGCUUUCg -3'
miRNA:   3'- -CGGCUUUUGc-CGUcuuu---CCCCGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 63582 0.7 0.841263
Target:  5'- -aCGuuAGCuGCAGAGAGGGGuCCUg- -3'
miRNA:   3'- cgGCuuUUGcCGUCUUUCCCC-GGAag -5'
13313 5' -52.8 NC_003409.1 + 116758 0.71 0.81519
Target:  5'- gGCCGGGugcGACGGUAGAcaggucuAGGGGCag-Ca -3'
miRNA:   3'- -CGGCUU---UUGCCGUCUu------UCCCCGgaaG- -5'
13313 5' -52.8 NC_003409.1 + 92023 0.71 0.806133
Target:  5'- uGuuGGAucucguGGCGGUGGGAcAGGGGCCUa- -3'
miRNA:   3'- -CggCUU------UUGCCGUCUU-UCCCCGGAag -5'
13313 5' -52.8 NC_003409.1 + 113219 0.71 0.796907
Target:  5'- aCCGAAGACGGUaacgggcucgGGAuAGGGGCg--- -3'
miRNA:   3'- cGGCUUUUGCCG----------UCUuUCCCCGgaag -5'
13313 5' -52.8 NC_003409.1 + 80550 0.71 0.787522
Target:  5'- uCCGAuGACGGuCAGuuuAAAGaGGGCCUUUu -3'
miRNA:   3'- cGGCUuUUGCC-GUC---UUUC-CCCGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 25946 0.72 0.718208
Target:  5'- uCCGGAGACGaGcCGGAcGGGGGCCc-- -3'
miRNA:   3'- cGGCUUUUGC-C-GUCUuUCCCCGGaag -5'
13313 5' -52.8 NC_003409.1 + 66437 0.75 0.549464
Target:  5'- uCCGAGGACguucuggGGCAGGAGGGGgacacagauGCCUUCu -3'
miRNA:   3'- cGGCUUUUG-------CCGUCUUUCCC---------CGGAAG- -5'
13313 5' -52.8 NC_003409.1 + 65167 1.13 0.002853
Target:  5'- uGCCGAAAACGGCAGAAAGGGGCCUUCg -3'
miRNA:   3'- -CGGCUUUUGCCGUCUUUCCCCGGAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.