miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13318 3' -46.2 NC_003409.1 + 101141 0.66 0.999937
Target:  5'- aGGAC-CGGAGUUUGCCAggggGguGCGGg -3'
miRNA:   3'- -CUUGuGUUUCAAGUGGUa---UguCGCUg -5'
13318 3' -46.2 NC_003409.1 + 53840 0.66 0.999937
Target:  5'- cGAACACGGAGUUgGCUacGUGCuuuuGGUGGg -3'
miRNA:   3'- -CUUGUGUUUCAAgUGG--UAUG----UCGCUg -5'
13318 3' -46.2 NC_003409.1 + 77103 0.66 0.999925
Target:  5'- aAGCGCAGcuuaccgcuacugugGGUgCACUgaGUGCGGCGGCc -3'
miRNA:   3'- cUUGUGUU---------------UCAaGUGG--UAUGUCGCUG- -5'
13318 3' -46.2 NC_003409.1 + 37941 0.66 0.999915
Target:  5'- cGAACgu-GAGUUCAUCAUA-GGUGGCa -3'
miRNA:   3'- -CUUGuguUUCAAGUGGUAUgUCGCUG- -5'
13318 3' -46.2 NC_003409.1 + 66968 0.66 0.999915
Target:  5'- aGGCACAGGGgguuUCACUaaGUAgGGUGGCc -3'
miRNA:   3'- cUUGUGUUUCa---AGUGG--UAUgUCGCUG- -5'
13318 3' -46.2 NC_003409.1 + 26148 0.66 0.999888
Target:  5'- uGGCACuguGAGggCAUUAUAC-GCGGCa -3'
miRNA:   3'- cUUGUGu--UUCaaGUGGUAUGuCGCUG- -5'
13318 3' -46.2 NC_003409.1 + 79338 0.66 0.999888
Target:  5'- cAACACGuccAGGUgUACCAUGgAGaCGACa -3'
miRNA:   3'- cUUGUGU---UUCAaGUGGUAUgUC-GCUG- -5'
13318 3' -46.2 NC_003409.1 + 88678 0.67 0.999753
Target:  5'- gGAACGa----UUUACgGUACAGCGACa -3'
miRNA:   3'- -CUUGUguuucAAGUGgUAUGUCGCUG- -5'
13318 3' -46.2 NC_003409.1 + 104645 0.67 0.999683
Target:  5'- -cGCGCcuAGUgaggCACCAUugcGCAGgGACu -3'
miRNA:   3'- cuUGUGuuUCAa---GUGGUA---UGUCgCUG- -5'
13318 3' -46.2 NC_003409.1 + 120575 0.67 0.999683
Target:  5'- aAGCGCGggcGGGUUCccgACCuucACGGCGGCa -3'
miRNA:   3'- cUUGUGU---UUCAAG---UGGua-UGUCGCUG- -5'
13318 3' -46.2 NC_003409.1 + 35908 0.67 0.999683
Target:  5'- uGGACGCGAuguaGGUgacCGCuCAgggACGGCGGCu -3'
miRNA:   3'- -CUUGUGUU----UCAa--GUG-GUa--UGUCGCUG- -5'
13318 3' -46.2 NC_003409.1 + 19204 0.67 0.999597
Target:  5'- aAACACGAaaaaaacguAGUaCGCgGcUGCAGCGACg -3'
miRNA:   3'- cUUGUGUU---------UCAaGUGgU-AUGUCGCUG- -5'
13318 3' -46.2 NC_003409.1 + 16286 0.67 0.999491
Target:  5'- uGAGC-CGcAGUUUACCGUAacuggcauucCAGUGACa -3'
miRNA:   3'- -CUUGuGUuUCAAGUGGUAU----------GUCGCUG- -5'
13318 3' -46.2 NC_003409.1 + 113425 0.67 0.999491
Target:  5'- cAACACGgcGaUCGCCugcgcCAGCGACg -3'
miRNA:   3'- cUUGUGUuuCaAGUGGuau--GUCGCUG- -5'
13318 3' -46.2 NC_003409.1 + 107520 0.67 0.999491
Target:  5'- cAACGCcguGGUUCGCCccuucCGGCGGCc -3'
miRNA:   3'- cUUGUGuu-UCAAGUGGuau--GUCGCUG- -5'
13318 3' -46.2 NC_003409.1 + 112816 0.67 0.999491
Target:  5'- gGGACAgGAaagagaagcAGUUCACCAU-CuguGCGACc -3'
miRNA:   3'- -CUUGUgUU---------UCAAGUGGUAuGu--CGCUG- -5'
13318 3' -46.2 NC_003409.1 + 102716 0.67 0.999491
Target:  5'- -cGCGCcAGGUUUGCCGgUACGGCGcCu -3'
miRNA:   3'- cuUGUGuUUCAAGUGGU-AUGUCGCuG- -5'
13318 3' -46.2 NC_003409.1 + 77504 0.67 0.999362
Target:  5'- cGACACcugucGAGUUgGCCGUaacccaGCAGUGACc -3'
miRNA:   3'- cUUGUGu----UUCAAgUGGUA------UGUCGCUG- -5'
13318 3' -46.2 NC_003409.1 + 126002 0.68 0.999016
Target:  5'- uGAGCAucCAAAGUUCACa--ACAGCaGCa -3'
miRNA:   3'- -CUUGU--GUUUCAAGUGguaUGUCGcUG- -5'
13318 3' -46.2 NC_003409.1 + 27856 0.7 0.995625
Target:  5'- --cCACAAAGg-CGCC--ACAGCGACg -3'
miRNA:   3'- cuuGUGUUUCaaGUGGuaUGUCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.