miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13318 5' -66.2 NC_003409.1 + 58975 0.66 0.460955
Target:  5'- uGGGUCCUCGgggcgGGCGUCgauaugUCCUucacuuugGCGCGg -3'
miRNA:   3'- -CCCGGGAGCa----CCGCGG------GGGA--------CGCGCg -5'
13318 5' -66.2 NC_003409.1 + 113771 0.66 0.460955
Target:  5'- cGGGCCgUUGgugggaaaaccGGCaCCaCCCUGUGCGg -3'
miRNA:   3'- -CCCGGgAGCa----------CCGcGG-GGGACGCGCg -5'
13318 5' -66.2 NC_003409.1 + 49131 0.66 0.453174
Target:  5'- aGGGCCaC-CGUGGCGUaucagguccuucgcaCCCUGgGacCGCa -3'
miRNA:   3'- -CCCGG-GaGCACCGCGg--------------GGGACgC--GCG- -5'
13318 5' -66.2 NC_003409.1 + 46442 0.66 0.435302
Target:  5'- uGGGCUUcgcagCGUGGCuCCCUCgGCGaCGUg -3'
miRNA:   3'- -CCCGGGa----GCACCGcGGGGGaCGC-GCG- -5'
13318 5' -66.2 NC_003409.1 + 120891 0.66 0.424445
Target:  5'- cGGGCgUUCGUaaGCGUCuggaucgacacaaaCCCUGCGCGg -3'
miRNA:   3'- -CCCGgGAGCAc-CGCGG--------------GGGACGCGCg -5'
13318 5' -66.2 NC_003409.1 + 19083 0.66 0.418666
Target:  5'- uGGCCCcgCGgaUGGCG-CUCCUGUGCa- -3'
miRNA:   3'- cCCGGGa-GC--ACCGCgGGGGACGCGcg -5'
13318 5' -66.2 NC_003409.1 + 37087 0.66 0.418666
Target:  5'- -aGCCUUCuUGGCGgCCCUUGCaUGCu -3'
miRNA:   3'- ccCGGGAGcACCGCgGGGGACGcGCG- -5'
13318 5' -66.2 NC_003409.1 + 108302 0.67 0.413751
Target:  5'- uGGGUuuCCUCGcgcgaugcuuuucucUGG-GCCUCUgcgGCGCGCa -3'
miRNA:   3'- -CCCG--GGAGC---------------ACCgCGGGGGa--CGCGCG- -5'
13318 5' -66.2 NC_003409.1 + 128070 0.67 0.410494
Target:  5'- gGGGCCCaugCGgGGCucugcuGCCCucaCCUGCGC-Ca -3'
miRNA:   3'- -CCCGGGa--GCaCCG------CGGG---GGACGCGcG- -5'
13318 5' -66.2 NC_003409.1 + 24996 0.67 0.410494
Target:  5'- cGGGauccCCCUCcggggaggGUGGCGCgccgggaucCCCCUccggggagggugGCGCGCc -3'
miRNA:   3'- -CCC----GGGAG--------CACCGCG---------GGGGA------------CGCGCG- -5'
13318 5' -66.2 NC_003409.1 + 24936 0.67 0.410494
Target:  5'- cGGGauccCCCUCcggggaggGUGGCGCgccgggaucCCCCUccggggagggugGCGCGCc -3'
miRNA:   3'- -CCC----GGGAG--------CACCGCG---------GGGGA------------CGCGCG- -5'
13318 5' -66.2 NC_003409.1 + 24876 0.67 0.410494
Target:  5'- cGGGauccCCCUCcggggaggGUGGCGCgccgggaucCCCCUccggggagggugGCGCGCc -3'
miRNA:   3'- -CCC----GGGAG--------CACCGCG---------GGGGA------------CGCGCG- -5'
13318 5' -66.2 NC_003409.1 + 24786 0.67 0.402422
Target:  5'- cGGGauccCCCUCcggggaggGUGGCGCgccgggaucCCCCUccggggaggggGCGCGCc -3'
miRNA:   3'- -CCC----GGGAG--------CACCGCG---------GGGGA-----------CGCGCG- -5'
13318 5' -66.2 NC_003409.1 + 16662 0.67 0.394452
Target:  5'- aGGCUgaagCUCGUGGUcacgaGCCCCCaGaCGgGCg -3'
miRNA:   3'- cCCGG----GAGCACCG-----CGGGGGaC-GCgCG- -5'
13318 5' -66.2 NC_003409.1 + 132622 0.68 0.356166
Target:  5'- aGGCCCcagucaacauccUCGgGGUGCCCCgaGaCGCGg -3'
miRNA:   3'- cCCGGG------------AGCaCCGCGGGGgaC-GCGCg -5'
13318 5' -66.2 NC_003409.1 + 73849 0.68 0.35175
Target:  5'- cGGGCCCg-GUGGUGCaguugccaacaguagUCCCUcugccggccaGCGCGUu -3'
miRNA:   3'- -CCCGGGagCACCGCG---------------GGGGA----------CGCGCG- -5'
13318 5' -66.2 NC_003409.1 + 128214 0.68 0.3416
Target:  5'- uGGGCCCcugaacgCG-GGCaCCCCCaacCGCGCc -3'
miRNA:   3'- -CCCGGGa------GCaCCGcGGGGGac-GCGCG- -5'
13318 5' -66.2 NC_003409.1 + 108387 0.68 0.3416
Target:  5'- cGGGUCCUguaaggauagCG-GGCGCCCCgagaucgcaCUGgGUGCc -3'
miRNA:   3'- -CCCGGGA----------GCaCCGCGGGG---------GACgCGCG- -5'
13318 5' -66.2 NC_003409.1 + 91142 0.69 0.313777
Target:  5'- aGGGaa-UUaauuguagaagGUGGCGCCUCCUGUGUGCc -3'
miRNA:   3'- -CCCgggAG-----------CACCGCGGGGGACGCGCG- -5'
13318 5' -66.2 NC_003409.1 + 109478 0.69 0.300522
Target:  5'- cGGCUCcCGUGG-GCCCaagaCgGCGCGCc -3'
miRNA:   3'- cCCGGGaGCACCgCGGGg---GaCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.