miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13324 3' -53.8 NC_003409.1 + 86305 1.06 0.004982
Target:  5'- gUUCAACACCGCGCGAUACCUGGCAACc -3'
miRNA:   3'- -AAGUUGUGGCGCGCUAUGGACCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 41804 0.75 0.494033
Target:  5'- --aGACACCGCGUcu--CCUGGCGGCg -3'
miRNA:   3'- aagUUGUGGCGCGcuauGGACCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 19558 0.73 0.597362
Target:  5'- -aCAACACgCGCGUGG--UCUGGCGACc -3'
miRNA:   3'- aaGUUGUG-GCGCGCUauGGACCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 132967 0.72 0.661105
Target:  5'- -gCAgcGCGCCGCGCGccugugcgcGUGCCaGGUAACg -3'
miRNA:   3'- aaGU--UGUGGCGCGC---------UAUGGaCCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 103983 0.71 0.713605
Target:  5'- cUCAGCaACUGCGUcauGUACCUGGCGu- -3'
miRNA:   3'- aAGUUG-UGGCGCGc--UAUGGACCGUug -5'
13324 3' -53.8 NC_003409.1 + 88011 0.71 0.713605
Target:  5'- --aGACGCCGgGgGAUACggGGCAACu -3'
miRNA:   3'- aagUUGUGGCgCgCUAUGgaCCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 131031 0.71 0.723921
Target:  5'- -cCAGCGCUGgGCGGUaaACCUGGagacCAACg -3'
miRNA:   3'- aaGUUGUGGCgCGCUA--UGGACC----GUUG- -5'
13324 3' -53.8 NC_003409.1 + 60300 0.7 0.744286
Target:  5'- cUCuccCGCCGCaGCGccGCCUGGCGAa -3'
miRNA:   3'- aAGuu-GUGGCG-CGCuaUGGACCGUUg -5'
13324 3' -53.8 NC_003409.1 + 97780 0.7 0.764226
Target:  5'- uUUUGGCGCuaaCGCGCGAgACUUGGCAGa -3'
miRNA:   3'- -AAGUUGUG---GCGCGCUaUGGACCGUUg -5'
13324 3' -53.8 NC_003409.1 + 72415 0.7 0.774012
Target:  5'- -cCAGCACCGacaaaGCGAgccgUACCUGGUucccGCg -3'
miRNA:   3'- aaGUUGUGGCg----CGCU----AUGGACCGu---UG- -5'
13324 3' -53.8 NC_003409.1 + 97392 0.69 0.802507
Target:  5'- -aCGACACCGUG-GAUAuucuCCaUGGCAACc -3'
miRNA:   3'- aaGUUGUGGCGCgCUAU----GG-ACCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 51661 0.69 0.820687
Target:  5'- -cCAAC-CgGCGgGAUGacCCUGGCGACc -3'
miRNA:   3'- aaGUUGuGgCGCgCUAU--GGACCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 20795 0.69 0.829504
Target:  5'- -----gGCCGgGCGcgGCCUGGCGcACa -3'
miRNA:   3'- aaguugUGGCgCGCuaUGGACCGU-UG- -5'
13324 3' -53.8 NC_003409.1 + 131073 0.68 0.854757
Target:  5'- --uGGCGCUG-GCGuagcugGCCUGGCAGCc -3'
miRNA:   3'- aagUUGUGGCgCGCua----UGGACCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 131401 0.68 0.86275
Target:  5'- ---cGCGCCGUGUGGccgcguuggugcUGCCUGGgAGCa -3'
miRNA:   3'- aaguUGUGGCGCGCU------------AUGGACCgUUG- -5'
13324 3' -53.8 NC_003409.1 + 128261 0.68 0.870518
Target:  5'- gUCAGCACgggGCGUGAUGgCgcaggugagGGCAGCa -3'
miRNA:   3'- aAGUUGUGg--CGCGCUAUgGa--------CCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 107483 0.68 0.870518
Target:  5'- -gCGGC-CCGCugacuGgGAUGcCCUGGCAGCg -3'
miRNA:   3'- aaGUUGuGGCG-----CgCUAU-GGACCGUUG- -5'
13324 3' -53.8 NC_003409.1 + 120299 0.68 0.878055
Target:  5'- cUCAACGCCaauauGCGCGGcUGCgUGGUAu- -3'
miRNA:   3'- aAGUUGUGG-----CGCGCU-AUGgACCGUug -5'
13324 3' -53.8 NC_003409.1 + 110094 0.67 0.885356
Target:  5'- -cCAGCGCCGCcagaGCGuuccugcGCCUGGcCGACc -3'
miRNA:   3'- aaGUUGUGGCG----CGCua-----UGGACC-GUUG- -5'
13324 3' -53.8 NC_003409.1 + 33488 0.67 0.891022
Target:  5'- --uGGCGCUGCuccagGCGAgaacagcccuccGCCUGGCAACa -3'
miRNA:   3'- aagUUGUGGCG-----CGCUa-----------UGGACCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.