Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13324 | 3' | -53.8 | NC_003409.1 | + | 4318 | 0.66 | 0.939778 |
Target: 5'- -aCAGCAUgGCcuGgGAUACCUcucagaGGCAACa -3' miRNA: 3'- aaGUUGUGgCG--CgCUAUGGA------CCGUUG- -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 12085 | 0.66 | 0.934757 |
Target: 5'- cUCGACAuUCGgGUGGUACgaGuGCAGCa -3' miRNA: 3'- aAGUUGU-GGCgCGCUAUGgaC-CGUUG- -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 14973 | 0.67 | 0.912095 |
Target: 5'- --aGGCACCccuaccgucGCGCGAgACgCUGGUAACu -3' miRNA: 3'- aagUUGUGG---------CGCGCUaUG-GACCGUUG- -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 18396 | 0.67 | 0.892414 |
Target: 5'- cUCGAUGCCGCGCuugGgUUGGCGAg -3' miRNA: 3'- aAGUUGUGGCGCGcuaUgGACCGUUg -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 19558 | 0.73 | 0.597362 |
Target: 5'- -aCAACACgCGCGUGG--UCUGGCGACc -3' miRNA: 3'- aaGUUGUG-GCGCGCUauGGACCGUUG- -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 20795 | 0.69 | 0.829504 |
Target: 5'- -----gGCCGgGCGcgGCCUGGCGcACa -3' miRNA: 3'- aaguugUGGCgCGCuaUGGACCGU-UG- -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 28839 | 0.67 | 0.899226 |
Target: 5'- --aAACACCGCGCGG--UCUGG-AGCu -3' miRNA: 3'- aagUUGUGGCGCGCUauGGACCgUUG- -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 33488 | 0.67 | 0.891022 |
Target: 5'- --uGGCGCUGCuccagGCGAgaacagcccuccGCCUGGCAACa -3' miRNA: 3'- aagUUGUGGCG-----CGCUa-----------UGGACCGUUG- -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 41804 | 0.75 | 0.494033 |
Target: 5'- --aGACACCGCGUcu--CCUGGCGGCg -3' miRNA: 3'- aagUUGUGGCGCGcuauGGACCGUUG- -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 51661 | 0.69 | 0.820687 |
Target: 5'- -cCAAC-CgGCGgGAUGacCCUGGCGACc -3' miRNA: 3'- aaGUUGuGgCGCgCUAU--GGACCGUUG- -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 52036 | 0.66 | 0.939778 |
Target: 5'- gUCAAUGCCGauguaccCGcUACCUGGCGAg -3' miRNA: 3'- aAGUUGUGGCgc-----GCuAUGGACCGUUg -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 60300 | 0.7 | 0.744286 |
Target: 5'- cUCuccCGCCGCaGCGccGCCUGGCGAa -3' miRNA: 3'- aAGuu-GUGGCG-CGCuaUGGACCGUUg -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 66781 | 0.66 | 0.939778 |
Target: 5'- -aCAGCGCCucaGCGAggACCUGcGCAGa -3' miRNA: 3'- aaGUUGUGGcg-CGCUa-UGGAC-CGUUg -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 71878 | 0.66 | 0.929479 |
Target: 5'- --aAGCACCGCcCGAUccuuuuuuGCCUGGUAc- -3' miRNA: 3'- aagUUGUGGCGcGCUA--------UGGACCGUug -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 72415 | 0.7 | 0.774012 |
Target: 5'- -cCAGCACCGacaaaGCGAgccgUACCUGGUucccGCg -3' miRNA: 3'- aaGUUGUGGCg----CGCU----AUGGACCGu---UG- -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 77438 | 0.67 | 0.899226 |
Target: 5'- --uGGgACCGgGCGAagGCCUGGCGc- -3' miRNA: 3'- aagUUgUGGCgCGCUa-UGGACCGUug -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 86305 | 1.06 | 0.004982 |
Target: 5'- gUUCAACACCGCGCGAUACCUGGCAACc -3' miRNA: 3'- -AAGUUGUGGCGCGCUAUGGACCGUUG- -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 88011 | 0.71 | 0.713605 |
Target: 5'- --aGACGCCGgGgGAUACggGGCAACu -3' miRNA: 3'- aagUUGUGGCgCgCUAUGgaCCGUUG- -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 88850 | 0.66 | 0.934757 |
Target: 5'- -gCAGCccCCGCGCcccUGCCUgccGGCAGCg -3' miRNA: 3'- aaGUUGu-GGCGCGcu-AUGGA---CCGUUG- -5' |
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13324 | 3' | -53.8 | NC_003409.1 | + | 95271 | 0.67 | 0.892414 |
Target: 5'- aUCAGgGCCaaGUGCGuga-CUGGCAGCg -3' miRNA: 3'- aAGUUgUGG--CGCGCuaugGACCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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