miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13328 5' -62.1 NC_003409.1 + 23357 0.66 0.580955
Target:  5'- aCCUGgaGGUGaccCCGUGCacccggGCGCUCu- -3'
miRNA:   3'- -GGACgaCCGCc--GGCACGa-----CGCGAGca -5'
13328 5' -62.1 NC_003409.1 + 119653 0.66 0.580955
Target:  5'- aCCUGgaGGUGaccCCGUGCacccggGCGCUCu- -3'
miRNA:   3'- -GGACgaCCGCc--GGCACGa-----CGCGAGca -5'
13328 5' -62.1 NC_003409.1 + 104924 0.66 0.571133
Target:  5'- gCCUGCUcuGGCGGgCGgucuugGUgagGCGgUCGUg -3'
miRNA:   3'- -GGACGA--CCGCCgGCa-----CGa--CGCgAGCA- -5'
13328 5' -62.1 NC_003409.1 + 107536 0.67 0.551617
Target:  5'- cCCUuCcGGCGGCCGUGgguccaGCGCUCu- -3'
miRNA:   3'- -GGAcGaCCGCCGGCACga----CGCGAGca -5'
13328 5' -62.1 NC_003409.1 + 94766 0.67 0.522744
Target:  5'- uCCUGCcuuUGGCGGCaGUGUUGCucacCUUGg -3'
miRNA:   3'- -GGACG---ACCGCCGgCACGACGc---GAGCa -5'
13328 5' -62.1 NC_003409.1 + 97094 0.67 0.522744
Target:  5'- ---aCUGGCGGCCuugguGUGCaGCaGCUCGUc -3'
miRNA:   3'- ggacGACCGCCGG-----CACGaCG-CGAGCA- -5'
13328 5' -62.1 NC_003409.1 + 131100 0.67 0.513247
Target:  5'- gCUGCUGGUGGCCcuggGUGUagUGgGC-CGg -3'
miRNA:   3'- gGACGACCGCCGG----CACG--ACgCGaGCa -5'
13328 5' -62.1 NC_003409.1 + 112938 0.68 0.503821
Target:  5'- cCUUGCcaaGCGGgCGcGUUGCGCUCGg -3'
miRNA:   3'- -GGACGac-CGCCgGCaCGACGCGAGCa -5'
13328 5' -62.1 NC_003409.1 + 98725 0.68 0.476016
Target:  5'- gCCUGUUGGCGuCCGUGgUGCcaaccCUCGc -3'
miRNA:   3'- -GGACGACCGCcGGCACgACGc----GAGCa -5'
13328 5' -62.1 NC_003409.1 + 9618 0.68 0.466917
Target:  5'- gUUGCUGGgGGuuGUGCUGCaugaggaUUCGUu -3'
miRNA:   3'- gGACGACCgCCggCACGACGc------GAGCA- -5'
13328 5' -62.1 NC_003409.1 + 127550 0.68 0.457909
Target:  5'- uUUGCUGGCGGCgCGUGCcaucgGUGgccaUCGg -3'
miRNA:   3'- gGACGACCGCCG-GCACGa----CGCg---AGCa -5'
13328 5' -62.1 NC_003409.1 + 83765 0.7 0.397627
Target:  5'- aCCUGgUGGCGGUCugGUGUUGUGUUUa- -3'
miRNA:   3'- -GGACgACCGCCGG--CACGACGCGAGca -5'
13328 5' -62.1 NC_003409.1 + 125734 0.7 0.381362
Target:  5'- uCCUGCUGcuGUGGCCcUGCUGCugugGCUCc- -3'
miRNA:   3'- -GGACGAC--CGCCGGcACGACG----CGAGca -5'
13328 5' -62.1 NC_003409.1 + 12266 0.7 0.381362
Target:  5'- -gUGCgGGgGGCCGgauUGCUGCaCUCGUa -3'
miRNA:   3'- ggACGaCCgCCGGC---ACGACGcGAGCA- -5'
13328 5' -62.1 NC_003409.1 + 113591 0.71 0.342685
Target:  5'- cCCgucGCUGGCGcaggcgaucGCCGUGUUGCGCgUGg -3'
miRNA:   3'- -GGa--CGACCGC---------CGGCACGACGCGaGCa -5'
13328 5' -62.1 NC_003409.1 + 89969 1.08 0.000799
Target:  5'- aCCUGCUGGCGGCCGUGCUGCGCUCGUu -3'
miRNA:   3'- -GGACGACCGCCGGCACGACGCGAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.