miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13338 5' -61.1 NC_003409.1 + 118721 1.08 0.001028
Target:  5'- gCGGUGGCACCCCAGGAACCCGUCCUGg -3'
miRNA:   3'- -GCCACCGUGGGGUCCUUGGGCAGGAC- -5'
13338 5' -61.1 NC_003409.1 + 127310 0.74 0.257053
Target:  5'- aGGaUGGCGcCCCCGGGAAUgCG-CCUGa -3'
miRNA:   3'- gCC-ACCGU-GGGGUCCUUGgGCaGGAC- -5'
13338 5' -61.1 NC_003409.1 + 118537 0.74 0.269192
Target:  5'- cCGGcgcgGcGCACCCCAGGAACCCGg---- -3'
miRNA:   3'- -GCCa---C-CGUGGGGUCCUUGGGCaggac -5'
13338 5' -61.1 NC_003409.1 + 118491 0.74 0.269192
Target:  5'- cCGGcgcgGcGCACCCCAGGAACCCGg---- -3'
miRNA:   3'- -GCCa---C-CGUGGGGUCCUUGGGCaggac -5'
13338 5' -61.1 NC_003409.1 + 118605 0.74 0.269192
Target:  5'- cCGGcgcgGcGCACCCCAGGAACCCGg---- -3'
miRNA:   3'- -GCCa---C-CGUGGGGUCCUUGGGCaggac -5'
13338 5' -61.1 NC_003409.1 + 118577 0.73 0.281788
Target:  5'- gCGGc-GCACCCCAGGAACCCGg---- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGCaggac -5'
13338 5' -61.1 NC_003409.1 + 24827 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 24977 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 25007 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 24947 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 24917 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 24887 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 24857 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 24797 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 24767 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 45098 0.72 0.327378
Target:  5'- -cGUGGCGCCCCuGGAcgagaaugacuacaACCCgGUCCUc -3'
miRNA:   3'- gcCACCGUGGGGuCCU--------------UGGG-CAGGAc -5'
13338 5' -61.1 NC_003409.1 + 96927 0.72 0.336832
Target:  5'- gCGGUGGC-UUCCAGGAACCUccggauGUCCa- -3'
miRNA:   3'- -GCCACCGuGGGGUCCUUGGG------CAGGac -5'
13338 5' -61.1 NC_003409.1 + 24568 0.72 0.34424
Target:  5'- cCGGcaGCACCCCAGGAGcCCCGgcgcgCCa- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUU-GGGCa----GGac -5'
13338 5' -61.1 NC_003409.1 + 70943 0.71 0.367157
Target:  5'- uGGUGGCACCCaCAGG--CCUGuUCCa- -3'
miRNA:   3'- gCCACCGUGGG-GUCCuuGGGC-AGGac -5'
13338 5' -61.1 NC_003409.1 + 24268 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.