miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13338 5' -61.1 NC_003409.1 + 16464 0.69 0.505658
Target:  5'- uCGGUGacuGCGCCUgcgCAGGAaacGCCCGUCUg- -3'
miRNA:   3'- -GCCAC---CGUGGG---GUCCU---UGGGCAGGac -5'
13338 5' -61.1 NC_003409.1 + 23922 0.66 0.652149
Target:  5'- uCGGUGGauggguGCCaggauuaUAGGGGCCUGUCCa- -3'
miRNA:   3'- -GCCACCg-----UGGg------GUCCUUGGGCAGGac -5'
13338 5' -61.1 NC_003409.1 + 24268 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24288 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24308 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24328 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24348 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24368 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24388 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24408 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24428 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24448 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24468 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24488 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24508 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24528 0.69 0.48702
Target:  5'- cCGGcaGCACCCCAGGAGCCCc----- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUUGGGcaggac -5'
13338 5' -61.1 NC_003409.1 + 24568 0.72 0.34424
Target:  5'- cCGGcaGCACCCCAGGAGcCCCGgcgcgCCa- -3'
miRNA:   3'- -GCCacCGUGGGGUCCUU-GGGCa----GGac -5'
13338 5' -61.1 NC_003409.1 + 24767 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 24797 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5'
13338 5' -61.1 NC_003409.1 + 24827 0.73 0.301552
Target:  5'- gGGUGGCGCgCCGGGAucCCCcUCCg- -3'
miRNA:   3'- gCCACCGUGgGGUCCUu-GGGcAGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.