Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13338 | 5' | -61.1 | NC_003409.1 | + | 127310 | 0.74 | 0.257053 |
Target: 5'- aGGaUGGCGcCCCCGGGAAUgCG-CCUGa -3' miRNA: 3'- gCC-ACCGU-GGGGUCCUUGgGCaGGAC- -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 118721 | 1.08 | 0.001028 |
Target: 5'- gCGGUGGCACCCCAGGAACCCGUCCUGg -3' miRNA: 3'- -GCCACCGUGGGGUCCUUGGGCAGGAC- -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 118605 | 0.74 | 0.269192 |
Target: 5'- cCGGcgcgGcGCACCCCAGGAACCCGg---- -3' miRNA: 3'- -GCCa---C-CGUGGGGUCCUUGGGCaggac -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 118577 | 0.73 | 0.281788 |
Target: 5'- gCGGc-GCACCCCAGGAACCCGg---- -3' miRNA: 3'- -GCCacCGUGGGGUCCUUGGGCaggac -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 118537 | 0.74 | 0.269192 |
Target: 5'- cCGGcgcgGcGCACCCCAGGAACCCGg---- -3' miRNA: 3'- -GCCa---C-CGUGGGGUCCUUGGGCaggac -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 118491 | 0.74 | 0.269192 |
Target: 5'- cCGGcgcgGcGCACCCCAGGAACCCGg---- -3' miRNA: 3'- -GCCa---C-CGUGGGGUCCUUGGGCaggac -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 113614 | 0.68 | 0.56322 |
Target: 5'- uGGgccaGGCACCUguuGGAccGCCCGUCgCUGg -3' miRNA: 3'- gCCa---CCGUGGGgu-CCU--UGGGCAG-GAC- -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 108762 | 0.66 | 0.642232 |
Target: 5'- uGGUGGC-CaaCAGGAGgCCGgCCUGc -3' miRNA: 3'- gCCACCGuGggGUCCUUgGGCaGGAC- -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 107810 | 0.69 | 0.515091 |
Target: 5'- aCGGUGGgcaCGCCCCuGGAGCUC--CCUGc -3' miRNA: 3'- -GCCACC---GUGGGGuCCUUGGGcaGGAC- -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 106787 | 0.67 | 0.602564 |
Target: 5'- uGGUgaGGCGuucaCCGGGGGCCCGcaccUCCUGa -3' miRNA: 3'- gCCA--CCGUgg--GGUCCUUGGGC----AGGAC- -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 103424 | 0.69 | 0.515091 |
Target: 5'- aCGGUGGCcUCCCuGGuGGCCUGUUCg- -3' miRNA: 3'- -GCCACCGuGGGGuCC-UUGGGCAGGac -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 97995 | 0.66 | 0.642232 |
Target: 5'- uGGUcuacaaacGGCGCCCUGGcacGAGCCCuGUCCa- -3' miRNA: 3'- gCCA--------CCGUGGGGUC---CUUGGG-CAGGac -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 96927 | 0.72 | 0.336832 |
Target: 5'- gCGGUGGC-UUCCAGGAACCUccggauGUCCa- -3' miRNA: 3'- -GCCACCGuGGGGUCCUUGGG------CAGGac -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 84044 | 0.66 | 0.6462 |
Target: 5'- cCGGUGGCgguuggcaaguuagaGCCCCAcgc-CCCGUCCc- -3' miRNA: 3'- -GCCACCG---------------UGGGGUccuuGGGCAGGac -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 80278 | 0.67 | 0.622384 |
Target: 5'- uGuGUGGCGCCCUacacgGGGAguuucgugACCaCGUCCa- -3' miRNA: 3'- gC-CACCGUGGGG-----UCCU--------UGG-GCAGGac -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 70943 | 0.71 | 0.367157 |
Target: 5'- uGGUGGCACCCaCAGG--CCUGuUCCa- -3' miRNA: 3'- gCCACCGUGGG-GUCCuuGGGC-AGGac -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 61045 | 0.66 | 0.681778 |
Target: 5'- uGG-GGCACCagCAGagaaaGGACCCGcCCUGc -3' miRNA: 3'- gCCaCCGUGGg-GUC-----CUUGGGCaGGAC- -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 49197 | 0.69 | 0.505658 |
Target: 5'- aCGGUgGGCAUagcuaCCCAGGAGCCCuaCCg- -3' miRNA: 3'- -GCCA-CCGUG-----GGGUCCUUGGGcaGGac -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 49151 | 0.66 | 0.671929 |
Target: 5'- uGGUGGCcauucGCaCCAGGAcggAgCCGUCCa- -3' miRNA: 3'- gCCACCG-----UGgGGUCCU---UgGGCAGGac -5' |
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13338 | 5' | -61.1 | NC_003409.1 | + | 45098 | 0.72 | 0.327378 |
Target: 5'- -cGUGGCGCCCCuGGAcgagaaugacuacaACCCgGUCCUc -3' miRNA: 3'- gcCACCGUGGGGuCCU--------------UGGG-CAGGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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