miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13341 3' -55.4 NC_003409.1 + 82427 0.66 0.903237
Target:  5'- -gGGGUGGgauUCCCUGG-GCCgacuGGGu -3'
miRNA:   3'- gaUCCAUC---AGGGACCaCGGgauuCCC- -5'
13341 3' -55.4 NC_003409.1 + 7371 0.66 0.903237
Target:  5'- uCUGGGagcaUGG-CCugcagaCUGGUGCCCUGguuGGGa -3'
miRNA:   3'- -GAUCC----AUCaGG------GACCACGGGAUu--CCC- -5'
13341 3' -55.4 NC_003409.1 + 131487 0.67 0.883134
Target:  5'- cCUGGGUcGUCuggagcaucaCCUGG-GCagCCUAAGGGc -3'
miRNA:   3'- -GAUCCAuCAG----------GGACCaCG--GGAUUCCC- -5'
13341 3' -55.4 NC_003409.1 + 113452 0.67 0.875973
Target:  5'- -cGGGcGGUCCaacaGGUGCCUggcccagGAGGGc -3'
miRNA:   3'- gaUCCaUCAGGga--CCACGGGa------UUCCC- -5'
13341 3' -55.4 NC_003409.1 + 130744 0.67 0.86859
Target:  5'- -cAGGUAcucUCCCUGG-GCCCagcuGGGc -3'
miRNA:   3'- gaUCCAUc--AGGGACCaCGGGauu-CCC- -5'
13341 3' -55.4 NC_003409.1 + 103427 0.68 0.836955
Target:  5'- gCUAcGGUGGccUCCCUGGUGgCCUGuucgauGGu -3'
miRNA:   3'- -GAU-CCAUC--AGGGACCACgGGAUu-----CCc -5'
13341 3' -55.4 NC_003409.1 + 104820 0.68 0.810328
Target:  5'- uUGGGUggAGUCCCugcgcaaUGGUGCCucaCUAggcgcGGGGg -3'
miRNA:   3'- gAUCCA--UCAGGG-------ACCACGG---GAU-----UCCC- -5'
13341 3' -55.4 NC_003409.1 + 119055 0.68 0.80229
Target:  5'- -gGGGUAGUCCgCUGGUauuCCCagcUGAGGu -3'
miRNA:   3'- gaUCCAUCAGG-GACCAc--GGG---AUUCCc -5'
13341 3' -55.4 NC_003409.1 + 23924 0.68 0.80229
Target:  5'- -gGGGUAGUCCgCUGGUauuCCCagcUGAGGu -3'
miRNA:   3'- gaUCCAUCAGG-GACCAc--GGG---AUUCCc -5'
13341 3' -55.4 NC_003409.1 + 131543 0.71 0.675357
Target:  5'- --cGGUAGUCCCUGGccGCCCgcAGc- -3'
miRNA:   3'- gauCCAUCAGGGACCa-CGGGauUCcc -5'
13341 3' -55.4 NC_003409.1 + 121345 1.1 0.00246
Target:  5'- cCUAGGUAGUCCCUGGUGCCCUAAGGGu -3'
miRNA:   3'- -GAUCCAUCAGGGACCACGGGAUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.