miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13341 5' -51.4 NC_003409.1 + 16482 0.66 0.984336
Target:  5'- uAGCAUUgguuuaaguucgAGGAUGUcaCUGGAA--UGCCa -3'
miRNA:   3'- -UCGUGAa-----------UCCUACG--GACCUUgaACGG- -5'
13341 5' -51.4 NC_003409.1 + 6380 0.66 0.98356
Target:  5'- gAGCACagugggccaggcgGGGGUGCCaUGGAcg--GCCg -3'
miRNA:   3'- -UCGUGaa-----------UCCUACGG-ACCUugaaCGG- -5'
13341 5' -51.4 NC_003409.1 + 120080 0.66 0.982756
Target:  5'- cGCGCUgGGGugacaaagcAUGCaCUGGAAaucgGCCa -3'
miRNA:   3'- uCGUGAaUCC---------UACG-GACCUUgaa-CGG- -5'
13341 5' -51.4 NC_003409.1 + 131742 0.66 0.980616
Target:  5'- gGGCACUgguugAGG-UGCCccaGGuacACUUGUCa -3'
miRNA:   3'- -UCGUGAa----UCCuACGGa--CCu--UGAACGG- -5'
13341 5' -51.4 NC_003409.1 + 33654 0.66 0.980616
Target:  5'- cGGCGgUUuGGGUGCCcucgcGcGACUUGCCc -3'
miRNA:   3'- -UCGUgAAuCCUACGGa----CcUUGAACGG- -5'
13341 5' -51.4 NC_003409.1 + 31678 0.66 0.978283
Target:  5'- --gGCUU-GGAUGCCgaccgGGAAUUggcugGCCu -3'
miRNA:   3'- ucgUGAAuCCUACGGa----CCUUGAa----CGG- -5'
13341 5' -51.4 NC_003409.1 + 73598 0.66 0.978283
Target:  5'- cAGCGC--GGGGUaCCggagGGGAgUUGCCu -3'
miRNA:   3'- -UCGUGaaUCCUAcGGa---CCUUgAACGG- -5'
13341 5' -51.4 NC_003409.1 + 110669 0.66 0.97575
Target:  5'- aGGCGCUcGGGAacCCUGGAGaagaUGUCa -3'
miRNA:   3'- -UCGUGAaUCCUacGGACCUUga--ACGG- -5'
13341 5' -51.4 NC_003409.1 + 95063 0.66 0.97575
Target:  5'- uGGCAUUUAGGca-CCUGGAACa-GCa -3'
miRNA:   3'- -UCGUGAAUCCuacGGACCUUGaaCGg -5'
13341 5' -51.4 NC_003409.1 + 72174 0.67 0.969737
Target:  5'- uGCACagAGuGGUGCCUcucccauuuugugGGAGCguccgGCCg -3'
miRNA:   3'- uCGUGaaUC-CUACGGA-------------CCUUGaa---CGG- -5'
13341 5' -51.4 NC_003409.1 + 18974 0.67 0.959784
Target:  5'- gGGcCAUUUuGGucGCCUGGAGCU-GCCc -3'
miRNA:   3'- -UC-GUGAAuCCuaCGGACCUUGAaCGG- -5'
13341 5' -51.4 NC_003409.1 + 52378 0.68 0.955883
Target:  5'- gGGCugGCUUcggAGGcuaGUGCCUGGAuaagaGC-UGCCa -3'
miRNA:   3'- -UCG--UGAA---UCC---UACGGACCU-----UGaACGG- -5'
13341 5' -51.4 NC_003409.1 + 52156 0.68 0.947327
Target:  5'- cGCACggGGGGUgGCCUGuGGCgugUGCg -3'
miRNA:   3'- uCGUGaaUCCUA-CGGACcUUGa--ACGg -5'
13341 5' -51.4 NC_003409.1 + 106374 0.68 0.937742
Target:  5'- cAGCGCUcugUAGGuAUGCCUGuaGACUUuCCa -3'
miRNA:   3'- -UCGUGA---AUCC-UACGGACc-UUGAAcGG- -5'
13341 5' -51.4 NC_003409.1 + 133778 0.69 0.927107
Target:  5'- uGCACcauGGAacggugGcCCUGGAACUgUGCCa -3'
miRNA:   3'- uCGUGaauCCUa-----C-GGACCUUGA-ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24607 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24567 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24527 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 117742 0.69 0.921394
Target:  5'- aAGCACUcggugggggAGGGUGCCcUGGuuGACacaaugUGCCg -3'
miRNA:   3'- -UCGUGAa--------UCCUACGG-ACC--UUGa-----ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24447 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.