miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13341 5' -51.4 NC_003409.1 + 121310 1.14 0.003141
Target:  5'- aAGCACUUAGGAUGCCUGGAACUUGCCg -3'
miRNA:   3'- -UCGUGAAUCCUACGGACCUUGAACGG- -5'
13341 5' -51.4 NC_003409.1 + 132786 0.74 0.716588
Target:  5'- gGGCACcccgAGGAUGUugaCUGGGGCcuuuUUGCCa -3'
miRNA:   3'- -UCGUGaa--UCCUACG---GACCUUG----AACGG- -5'
13341 5' -51.4 NC_003409.1 + 133184 0.73 0.767606
Target:  5'- aGGCGCUggcgccgcGGAccgGCCUGGAGCUguuUGUCu -3'
miRNA:   3'- -UCGUGAau------CCUa--CGGACCUUGA---ACGG- -5'
13341 5' -51.4 NC_003409.1 + 26115 0.72 0.777453
Target:  5'- gAGCAgUUAGGAUGaCCaGGAGCguccaggUGCa -3'
miRNA:   3'- -UCGUgAAUCCUAC-GGaCCUUGa------ACGg -5'
13341 5' -51.4 NC_003409.1 + 131811 0.72 0.787156
Target:  5'- gGGUAUU--GGGUGCCUGGA---UGCCa -3'
miRNA:   3'- -UCGUGAauCCUACGGACCUugaACGG- -5'
13341 5' -51.4 NC_003409.1 + 115958 0.71 0.850217
Target:  5'- cAGCGCcuuGGGUGCCucUGGGugU-GCCg -3'
miRNA:   3'- -UCGUGaauCCUACGG--ACCUugAaCGG- -5'
13341 5' -51.4 NC_003409.1 + 57203 0.7 0.874144
Target:  5'- cGCAU--GGGAaucGCCUGGGcUUUGCCg -3'
miRNA:   3'- uCGUGaaUCCUa--CGGACCUuGAACGG- -5'
13341 5' -51.4 NC_003409.1 + 108354 0.7 0.888196
Target:  5'- cGCACU--GGGUGCCUGcuguaaGAGCUgagugauggcgugUGCCa -3'
miRNA:   3'- uCGUGAauCCUACGGAC------CUUGA-------------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24487 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 117742 0.69 0.921394
Target:  5'- aAGCACUcggugggggAGGGUGCCcUGGuuGACacaaugUGCCg -3'
miRNA:   3'- -UCGUGAa--------UCCUACGG-ACC--UUGa-----ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24727 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24687 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24647 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24607 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24567 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24527 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24447 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 133778 0.69 0.927107
Target:  5'- uGCACcauGGAacggugGcCCUGGAACUgUGCCa -3'
miRNA:   3'- uCGUGaauCCUa-----C-GGACCUUGA-ACGG- -5'
13341 5' -51.4 NC_003409.1 + 106374 0.68 0.937742
Target:  5'- cAGCGCUcugUAGGuAUGCCUGuaGACUUuCCa -3'
miRNA:   3'- -UCGUGA---AUCC-UACGGACc-UUGAAcGG- -5'
13341 5' -51.4 NC_003409.1 + 52156 0.68 0.947327
Target:  5'- cGCACggGGGGUgGCCUGuGGCgugUGCg -3'
miRNA:   3'- uCGUGaaUCCUA-CGGACcUUGa--ACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.