Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13341 | 5' | -51.4 | NC_003409.1 | + | 52378 | 0.68 | 0.955883 |
Target: 5'- gGGCugGCUUcggAGGcuaGUGCCUGGAuaagaGC-UGCCa -3' miRNA: 3'- -UCG--UGAA---UCC---UACGGACCU-----UGaACGG- -5' |
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13341 | 5' | -51.4 | NC_003409.1 | + | 18974 | 0.67 | 0.959784 |
Target: 5'- gGGcCAUUUuGGucGCCUGGAGCU-GCCc -3' miRNA: 3'- -UC-GUGAAuCCuaCGGACCUUGAaCGG- -5' |
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13341 | 5' | -51.4 | NC_003409.1 | + | 72174 | 0.67 | 0.969737 |
Target: 5'- uGCACagAGuGGUGCCUcucccauuuugugGGAGCguccgGCCg -3' miRNA: 3'- uCGUGaaUC-CUACGGA-------------CCUUGaa---CGG- -5' |
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13341 | 5' | -51.4 | NC_003409.1 | + | 95063 | 0.66 | 0.97575 |
Target: 5'- uGGCAUUUAGGca-CCUGGAACa-GCa -3' miRNA: 3'- -UCGUGAAUCCuacGGACCUUGaaCGg -5' |
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13341 | 5' | -51.4 | NC_003409.1 | + | 110669 | 0.66 | 0.97575 |
Target: 5'- aGGCGCUcGGGAacCCUGGAGaagaUGUCa -3' miRNA: 3'- -UCGUGAaUCCUacGGACCUUga--ACGG- -5' |
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13341 | 5' | -51.4 | NC_003409.1 | + | 31678 | 0.66 | 0.978283 |
Target: 5'- --gGCUU-GGAUGCCgaccgGGAAUUggcugGCCu -3' miRNA: 3'- ucgUGAAuCCUACGGa----CCUUGAa----CGG- -5' |
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13341 | 5' | -51.4 | NC_003409.1 | + | 73598 | 0.66 | 0.978283 |
Target: 5'- cAGCGC--GGGGUaCCggagGGGAgUUGCCu -3' miRNA: 3'- -UCGUGaaUCCUAcGGa---CCUUgAACGG- -5' |
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13341 | 5' | -51.4 | NC_003409.1 | + | 131742 | 0.66 | 0.980616 |
Target: 5'- gGGCACUgguugAGG-UGCCccaGGuacACUUGUCa -3' miRNA: 3'- -UCGUGAa----UCCuACGGa--CCu--UGAACGG- -5' |
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13341 | 5' | -51.4 | NC_003409.1 | + | 33654 | 0.66 | 0.980616 |
Target: 5'- cGGCGgUUuGGGUGCCcucgcGcGACUUGCCc -3' miRNA: 3'- -UCGUgAAuCCUACGGa----CcUUGAACGG- -5' |
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13341 | 5' | -51.4 | NC_003409.1 | + | 120080 | 0.66 | 0.982756 |
Target: 5'- cGCGCUgGGGugacaaagcAUGCaCUGGAAaucgGCCa -3' miRNA: 3'- uCGUGAaUCC---------UACG-GACCUUgaa-CGG- -5' |
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13341 | 5' | -51.4 | NC_003409.1 | + | 6380 | 0.66 | 0.98356 |
Target: 5'- gAGCACagugggccaggcgGGGGUGCCaUGGAcg--GCCg -3' miRNA: 3'- -UCGUGaa-----------UCCUACGG-ACCUugaaCGG- -5' |
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13341 | 5' | -51.4 | NC_003409.1 | + | 16482 | 0.66 | 0.984336 |
Target: 5'- uAGCAUUgguuuaaguucgAGGAUGUcaCUGGAA--UGCCa -3' miRNA: 3'- -UCGUGAa-----------UCCUACG--GACCUUgaACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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