miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13341 5' -51.4 NC_003409.1 + 26115 0.72 0.777453
Target:  5'- gAGCAgUUAGGAUGaCCaGGAGCguccaggUGCa -3'
miRNA:   3'- -UCGUgAAUCCUAC-GGaCCUUGa------ACGg -5'
13341 5' -51.4 NC_003409.1 + 24727 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24687 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24647 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24607 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24567 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24527 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24487 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 24447 0.69 0.921394
Target:  5'- cGGgGCUccUGGGGUGCUgccGGGGCUccuggggugcUGCCg -3'
miRNA:   3'- -UCgUGA--AUCCUACGGa--CCUUGA----------ACGG- -5'
13341 5' -51.4 NC_003409.1 + 18974 0.67 0.959784
Target:  5'- gGGcCAUUUuGGucGCCUGGAGCU-GCCc -3'
miRNA:   3'- -UC-GUGAAuCCuaCGGACCUUGAaCGG- -5'
13341 5' -51.4 NC_003409.1 + 16482 0.66 0.984336
Target:  5'- uAGCAUUgguuuaaguucgAGGAUGUcaCUGGAA--UGCCa -3'
miRNA:   3'- -UCGUGAa-----------UCCUACG--GACCUUgaACGG- -5'
13341 5' -51.4 NC_003409.1 + 6380 0.66 0.98356
Target:  5'- gAGCACagugggccaggcgGGGGUGCCaUGGAcg--GCCg -3'
miRNA:   3'- -UCGUGaa-----------UCCUACGG-ACCUugaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.