miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 3' -57 NC_003409.1 + 33170 0.66 0.838139
Target:  5'- -cGCgAGGA-CCAC--CGGCAGGcAGCCa -3'
miRNA:   3'- guCG-UCCUcGGUGuuGUCGUCC-UCGG- -5'
13345 3' -57 NC_003409.1 + 34924 0.66 0.811493
Target:  5'- uCAGCAGGgcgugauAGuCCACGccuCGGUacccggAGGGGCCg -3'
miRNA:   3'- -GUCGUCC-------UC-GGUGUu--GUCG------UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 35234 0.7 0.614084
Target:  5'- gAGUacuugAGGAGCCG--GCGGUAGGuGGCCa -3'
miRNA:   3'- gUCG-----UCCUCGGUguUGUCGUCC-UCGG- -5'
13345 3' -57 NC_003409.1 + 37457 0.66 0.812379
Target:  5'- uCGGCGGaGGuCCACAACucuGuCAGG-GCCg -3'
miRNA:   3'- -GUCGUCcUC-GGUGUUGu--C-GUCCuCGG- -5'
13345 3' -57 NC_003409.1 + 40523 0.66 0.812379
Target:  5'- cCGGCGGuGGCgGCcAUGGUGGGAGUCu -3'
miRNA:   3'- -GUCGUCcUCGgUGuUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 45172 0.66 0.812379
Target:  5'- gCAGUAacGGCCACAuguGCGGUauGGGGGUCg -3'
miRNA:   3'- -GUCGUccUCGGUGU---UGUCG--UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 46193 0.68 0.736961
Target:  5'- gUAGUuauGGcGGCCACGugGGCcGGGGCg -3'
miRNA:   3'- -GUCGu--CC-UCGGUGUugUCGuCCUCGg -5'
13345 3' -57 NC_003409.1 + 46761 0.66 0.838139
Target:  5'- uGGCGGGGGCCc---CAGCA--AGCCu -3'
miRNA:   3'- gUCGUCCUCGGuguuGUCGUccUCGG- -5'
13345 3' -57 NC_003409.1 + 48165 0.66 0.812379
Target:  5'- gGGCAGGGcaCCACGAUgaAGCuuucGAGCCa -3'
miRNA:   3'- gUCGUCCUc-GGUGUUG--UCGuc--CUCGG- -5'
13345 3' -57 NC_003409.1 + 54273 0.67 0.766207
Target:  5'- uGGCuGGAGCCcuucCAACAGCAGcuAGUa -3'
miRNA:   3'- gUCGuCCUCGGu---GUUGUCGUCc-UCGg -5'
13345 3' -57 NC_003409.1 + 60948 0.71 0.542331
Target:  5'- uGGCcucAGGGGCCucguuCGACuGGCAGGAGUa -3'
miRNA:   3'- gUCG---UCCUCGGu----GUUG-UCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 61864 0.68 0.727012
Target:  5'- -uGCAGGcAGuCCAgguCGACAGCGGGgacggggggugAGCCu -3'
miRNA:   3'- guCGUCC-UC-GGU---GUUGUCGUCC-----------UCGG- -5'
13345 3' -57 NC_003409.1 + 67803 0.66 0.803445
Target:  5'- gCGGUGGGuGCgGCGcGCAGgGGGcGCCa -3'
miRNA:   3'- -GUCGUCCuCGgUGU-UGUCgUCCuCGG- -5'
13345 3' -57 NC_003409.1 + 72845 0.7 0.603733
Target:  5'- aCAGaaaAGGAuuucugacaGCCGCAuGCAGCGGGgugAGCCu -3'
miRNA:   3'- -GUCg--UCCU---------CGGUGU-UGUCGUCC---UCGG- -5'
13345 3' -57 NC_003409.1 + 73491 0.76 0.285005
Target:  5'- gGGCAGGGGCgcucagaAUAACGGCGGGuuuuGCCa -3'
miRNA:   3'- gUCGUCCUCGg------UGUUGUCGUCCu---CGG- -5'
13345 3' -57 NC_003409.1 + 73989 0.74 0.400745
Target:  5'- aCGGCGGcGGCUACGGCGGCAGaGGCg -3'
miRNA:   3'- -GUCGUCcUCGGUGUUGUCGUCcUCGg -5'
13345 3' -57 NC_003409.1 + 74365 0.72 0.502547
Target:  5'- uGGCGGGGGUaACGACaguAGCGGGGGUUg -3'
miRNA:   3'- gUCGUCCUCGgUGUUG---UCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 76909 0.68 0.705858
Target:  5'- aGGCgacgaagAGGAGCCucgACAACacgGGCGGGGGUUg -3'
miRNA:   3'- gUCG-------UCCUCGG---UGUUG---UCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 77529 0.66 0.803445
Target:  5'- cCAGCAGuGAccuaguaucgagGCCACAAauaaAGCcAGG-GCCa -3'
miRNA:   3'- -GUCGUC-CU------------CGGUGUUg---UCG-UCCuCGG- -5'
13345 3' -57 NC_003409.1 + 83245 0.67 0.798007
Target:  5'- aGGCAugcaGAGUCGCAgaaguauuucugcgcGCGGaCAGGAGCUg -3'
miRNA:   3'- gUCGUc---CUCGGUGU---------------UGUC-GUCCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.